Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00052 ATGAAGTTCCCAACTTATTCTTTTTCCACTTCAATTTGCATTGCACTTTTCTTCCGTTTGACGATATTATGTTTAGTTGTTTTCTACAAAACAAAAGCTGCTTTGAAACTGCCACCAAATGCTTCAATTCCAGCAGTGTTTGTGTTTGGAGATTCAATCATGGATACGGGAAATAATAATAACATGACAACACCATCTAGGTGCAATTACCCTCCATATGGCAAAGATTTTCAAGGAGGAATTCCAACTGGGAGATTTAGCAACGGAAAGGTTCCATCAGATCTTATAGTTGAAGAGTTGAGCATTAAAGAGTATTTGCCAGCATATTTGGATCCAAATCTCCATCCTAGTGAATTGGTCACCGGCGTTAACTTTGCATCCGGTGGTGCAGGATATGATCCTTTGACGTCAAAATTAGAGGCAGCTATATCTATGTCTGGGCAGCTAGACTTATTCAAAGATTACATTGTGAAGCTTAAAGAACTTGTTGGTGAAGATAGAACAAACTTTATCTTAGCCAATAGTATATTTTTTGTGGTATTAGGAAGCAATGATATTTCTAACACATACTACTTATCCCATTTGAGACAAGTGCACTATGATCTTCCTACATACTCTGACCTTTTAGTCAACTCAGCTTATAATTTCTACAAGGAAATATATGAATTAGGTGTAAGGAGGATTGGAGTATTCAATGTACCACCAATTGGGTGTGTGCCTTTTCAGAGAACAATGGCTGGTGGAATAACAAGAAAATGTGTGCAATTGTATGATGATGCAGTTGTGTTCTTTAACAACAAATTATCAATGGGGATTGATTCCTTTAAGCAGAACTTCCCAAGTAGCAACATTGTTTACATGGATATTTACAACCCTATACTTGATATCATTGTCAACTATAAAAAATATGGATATAAAATTGGAGACAGAGGGTGTTGTGGCACAGGCAAAATAGAAGTTACTTATTTGTGCAACCATTTGGATCCCATTTGTCCCAACGATTTGGATTATGTCTTTTGGGATAGTTTTCATCCTACTGAATCCGCTTACAGAAAACTTGTTGGTCCTATTCTACAAAAATACATGCACAAGTTACTGTGA 1101 0.3642 MKFPTYSFSTSICIALFFRLTILCLVVFYKTKAALKLPPNASIPAVFVFGDSIMDTGNNNNMTTPSRCNYPPYGKDFQGGIPTGRFSNGKVPSDLIVEELSIKEYLPAYLDPNLHPSELVTGVNFASGGAGYDPLTSKLEAAISMSGQLDLFKDYIVKLKELVGEDRTNFILANSIFFVVLGSNDISNTYYLSHLRQVHYDLPTYSDLLVNSAYNFYKEIYELGVRRIGVFNVPPIGCVPFQRTMAGGITRKCVQLYDDAVVFFNNKLSMGIDSFKQNFPSSNIVYMDIYNPILDIIVNYKKYGYKIGDRGCCGTGKIEVTYLCNHLDPICPNDLDYVFWDSFHPTESAYRKLVGPILQKYMHKLL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00052 366 CDD SGNH_plant_lipase_like 44 361 IPR035669 -
Trre1g00052 366 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 46 57 IPR008265 GO:0006629|GO:0016298
Trre1g00052 366 PANTHER GDSL ESTERASE/LIPASE EXL3 24 354 - -
Trre1g00052 366 FunFam GDSL esterase/lipase APG 35 362 - -
Trre1g00052 366 Gene3D SGNH hydrolase 33 362 IPR036514 -
Trre1g00052 366 SUPERFAMILY SGNH hydrolase 45 361 - -
Trre1g00052 366 Pfam GDSL-like Lipase/Acylhydrolase 46 353 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00052 Trre-Chr1 373418 375522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00052 40 365 Pollen Coat Proteome AT1G75910 39.514 1.57e-73 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00052 - - gmx:100786548 525.398