Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00051 ATGGGTCGTGCAAGAATATCTATGGAACTCGTGCAAAAGGAGAAAACAAGAAAGAATGGTTTGATGAAAAAAGTGAATGAAATTTCTACTCTTTGTGATGTTGATGTTTGTGTGATTCTCTATGCTCCCAACTATGAAGGACAAGGTTTTGTTGAACCTGAAATATGGCCTGAAGACAAAATAAAGGTACAAAGAATTCTTCAAAAGTACTTCAATACAACAATTGATAGGCGTCCTAAAGTCTATGATATTCAAGAGTATTTTAAGAAAAAGATGAAAATAGTAGAATCCGAAATTTTCAAAGTGAACAAAGAGATGTTAAAGGTTATGTATCCATCTTGGAATGAATCCTTCAACTCTCTTAGAGAGGAACAGTTGAGGTTATTTGCTAGCATCTTGGATTCAAAGCTTGATATTTGTAATCAAAAGATGAATATGCTAAAAGGAGATGATAATGGAAAAGCAATAGCTGAATTACACAAGGTTAATAAACCTAATACTCCTTATTTAACCTCAAATACAATTAGTGACTTCAATCTCATGCAAAACAACTTGTCTCTGGCACAAATTTACACTCCATTGATGAATAGTAGTGATAAAAACCCCTTGGAGTTTTGGCCACTTGAATTGGGGCAGAGCTCTCAACCTTCTTCGATATTTTCCAGTGCACAAGCCTCTTATCAGGTGGAGTCTAAGGAGTCTCAATGCATGCAAGTTGATGCTAATTGGGCTGATCAAATTGATGCTAATGTTACCTATGATCCTAAAATCGATACTAAAAGGAAGAATGGAGCTGAAAACAATGGAAACTTGTCATCATACTATTACAATGGAAATACACCAGCAATGCAATCATATAATATTGATATGCAGACTCTTCCTTTTCAGAGTCTTCCAAACCTACCGTATGGATTTCAACTTGATGAATTTTATGATATATAG 942 0.3461 MGRARISMELVQKEKTRKNGLMKKVNEISTLCDVDVCVILYAPNYEGQGFVEPEIWPEDKIKVQRILQKYFNTTIDRRPKVYDIQEYFKKKMKIVESEIFKVNKEMLKVMYPSWNESFNSLREEQLRLFASILDSKLDICNQKMNMLKGDDNGKAIAELHKVNKPNTPYLTSNTISDFNLMQNNLSLAQIYTPLMNSSDKNPLEFWPLELGQSSQPSSIFSSAQASYQVESKESQCMQVDANWADQIDANVTYDPKIDTKRKNGAENNGNLSSYYYNGNTPAMQSYNIDMQTLPFQSLPNLPYGFQLDEFYDI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00051 313 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Trre1g00051 313 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 44 IPR002100 GO:0003677|GO:0046983
Trre1g00051 313 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Trre1g00051 313 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Trre1g00051 313 ProSiteProfiles MADS-box domain profile. 17 54 IPR002100 GO:0003677|GO:0046983
Trre1g00051 313 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Trre1g00051 313 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00051 Trre-Chr1 369383 370324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00051 1 119 Type I MADS-box Gene Family AT5G55690 39.370 1.12e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g00051 SRF-TF 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00051 - - tpra:123913303 398.282