Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00043 ATGGAGAGATTAATATGGGTAACATTAGTGACAATTTTTCTTGTTTTGTTGGGTAGAGTATCCAACATTGCAATTGCACAAGCTACCAATGCAGCATTTCCTGCAGTGTTTGCATTTGGTGACTCAATCTATGACACTGGAAATAATAACAACCTTTTAACTGCATCTAAGTGTAACTTTCCTCCGTACGGAAAGGATTTCTACGGAGGACAGGCTACCGGAAGATTCGGCAATGGCAAAGTTCTATCAGATTTGATAACTTCGGCTTTGGGAGTGAAAGACACATTGCCAGCATACTTGAATCCATCTTTAACGCCGCAAGACCTTCCTACCGGGGTATGCTTTGCATCAGGTGGTTCAGGTTTTGATGATTTGACAGCAAACATGCAGGGAGGAGTATTGACAATGGGGCAACAATTGAGATATTTCGAACAATACATAGAAAAACTTAAAGCAGTTGTTGGAGCCGAAAAGGCAGCAGATATCATATCTAAAGCTTTGTTTATAATATCAGCAGGAAACAATGATGTTGCATTTGCTTATTCTTTTACTATAAGGAGAGCTTTGCCTTTCGATGTATATTGCGGTCAATTAGTTAGTGCAGCTCAAAATTTTCTTAAGAGTCTATATCAATTGGGAGCACGACACGTGTGGGTTCAAAGTACAGTGACATTGGGATGCTTACCTGCAGCTAGAACAATGACAGGACCATTAAGGTTATGTGTAGATTATGAGAATATGTACGCACAACAATTTAATGGCATGTTATCAGCAGGTGTTGCAAATCTTAAAGGCTCCCTTCCTGATTATGATCTTAGATTTCTTGATGTCTATACTCCTATGCTTCGTCTCATACAGAATCCTTTTGCAGCAGGGTTTGTAAATGTGTGGAATGGGTGCTGTGGAACAGGAACATTTGAAATGGGACCAGCATGCAACATGTTAACATTCCAATGTCCAAGTACTGCACAATATTTTTTCTGGGATGTTGCTCATCCTACGGAGAGAGCTTATCAAGCCACTCTTGCTCAATTGTTACATGCTCAAAACTACGATCTTACTAGTTACAATATTACCAAAACTCTTCATCCTTTGAATGTATCAAATCTTATTTTTTAA 1119 0.3905 MERLIWVTLVTIFLVLLGRVSNIAIAQATNAAFPAVFAFGDSIYDTGNNNNLLTASKCNFPPYGKDFYGGQATGRFGNGKVLSDLITSALGVKDTLPAYLNPSLTPQDLPTGVCFASGGSGFDDLTANMQGGVLTMGQQLRYFEQYIEKLKAVVGAEKAADIISKALFIISAGNNDVAFAYSFTIRRALPFDVYCGQLVSAAQNFLKSLYQLGARHVWVQSTVTLGCLPAARTMTGPLRLCVDYENMYAQQFNGMLSAGVANLKGSLPDYDLRFLDVYTPMLRLIQNPFAAGFVNVWNGCCGTGTFEMGPACNMLTFQCPSTAQYFFWDVAHPTERAYQATLAQLLHAQNYDLTSYNITKTLHPLNVSNLIF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00043 372 SUPERFAMILY SGNH hydrolase 37 345 - -
Trre1g00043 372 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 36 47 IPR008265 GO:0006629|GO:0016298
Trre1g00043 372 CDD SGNH_plant_lipase_like 34 348 IPR035669 -
Trre1g00043 372 Gene3D SGNH hydrolase 22 351 IPR036514 -
Trre1g00043 372 PANTHER GDSL ESTERASE/LIPASE EXL3 15 343 - -
Trre1g00043 372 Pfam GDSL-like Lipase/Acylhydrolase 36 340 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00043 Trre-Chr1 330959 332656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00043 12 347 Pollen Coat Proteome AT1G75910 40.407 4.32e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00043 - - mtr:11422775 607.06