Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00042 ATGGTTAGCACTCCTAAATCTTCCTCTAATCATCACTCTCCGACGACTGCTCCTTCATCGGCGCCGTCTGGTGACAGCAATAACCCTAATTTTACGCGAAAAACCCTTCCTTCACCCTGGGCTCAGGTCGTCCGTGGCGGCGAGACAGAATCACCTACAGGTGTTCATCAATCACTGCCGTCATCATCGTCGTCTTCTTCTTCCTCTCTGACTACAGGCACAGCTGACCAAGCGCCGTCGTGTGATGATTCTCCAAAGGCGGTATCTATTCCTCCGCCGCCGGTGGATGACCAAAATACGGTATCCTCCGTTGTAGATAACTCCGATGGTAGTGATGGCAATGCAGGTCGTTCTAAGAAGCCTGCATGGAACAAACCCTCAAACGGTGTCGTTGAGACTTCTCCTGTAATGGGTGCTGAATCCTGGCCTGCTTTGTCTGAATCCACCAAAATTTCTGCCAAATTTACAGCTGATGGATCACCTTCCACTTCTCAGGGGCCTATAATTTCACATCCCCCTCAGAGACAAGGTACTAGTAACTCAAGATCTAGTTCTGCTTCTGCAACAAACAATAATATGCCCAACAGGCCAAGACCCCAAAGGCGGGTAGGTGGCAGCAACGTTGGGCCTGGTCCTGCTCAAAGCAGCTTGTCCAACCCTCCTACTCCTCCACCGGCGCCTCCTTTTCCTGTATATCAGCTCCCTCCAGTCAACTATCGGAATATGGGGCCAATTATCCCAGACTCTTCTCCAAGAGATCATCACCGAAACAATAACTGGGATGCCAGACCATTAGTAGGGAGTTCCTCTCGTAGGGGCAACTTTGGGTCCCATTCCCGAGGAGATGGTTCCTATCATCATAATAATTATAGTAACAGGCGTGATCACGACCGTGGAAATTTTGTGAATACCAGAGATGCTCACGCACCCCAACCAAGGATGCCTCCCAGAGGAATATTGAGGCACCCACCACCCAATACTGCTGCATTTTTGGGTCCTCAGCCAATTGGACCTTTTCCAAACCCCGTTCCTTATCCTGAGTTGTATTACTTTCCAGCAGTACCGTTGGATCCCTTTAGGGGTATGCCAGTCTTCCCCCACAGCCCTTCTTCTCCTGTACCATTCTTCCCTCCCCCTCCTCCTCCTGCTGCTGCTGCTGCAGAATCTCCTTTGCCCATTTTGATTGTCAACCAGATTGATTATTACTTTAGTGATGCTAATATAGCGAAAGATGAGTTTTTAAAGTCCAATATGGATGAAGAGGGCTGGGTTCCAATTACCTTGATAGCAAATTTCCCTCGAGTTAGAAATTTGACAAGCAACATTCAGCTGATATTGGAGTCTATGAGAACTTCAAAAGTTGTGGATGTCCAGGGCGACAAGTTGAGGAGGCACGATGAGTGGATGAAATATTTGCCCTCTGCTCAGGTTCAAGCTGATTCTGGTTCAGTTTCACCTAGTGAATCAAGCTACAATAACCTCACTGCTGATTTTCAGACAACCATCTCTCTGGAAAAAACAACTAAAGATGAAGGTGAGTCTTCCGGTCAGTCTCAACTCTCAAACGGAAGTGATGTTGCGGGGAACCCTAAATAA 1596 0.4806 MVSTPKSSSNHHSPTTAPSSAPSGDSNNPNFTRKTLPSPWAQVVRGGETESPTGVHQSLPSSSSSSSSSLTTGTADQAPSCDDSPKAVSIPPPPVDDQNTVSSVVDNSDGSDGNAGRSKKPAWNKPSNGVVETSPVMGAESWPALSESTKISAKFTADGSPSTSQGPIISHPPQRQGTSNSRSSSASATNNNMPNRPRPQRRVGGSNVGPGPAQSSLSNPPTPPPAPPFPVYQLPPVNYRNMGPIIPDSSPRDHHRNNNWDARPLVGSSSRRGNFGSHSRGDGSYHHNNYSNRRDHDRGNFVNTRDAHAPQPRMPPRGILRHPPPNTAAFLGPQPIGPFPNPVPYPELYYFPAVPLDPFRGMPVFPHSPSSPVPFFPPPPPPAAAAAESPLPILIVNQIDYYFSDANIAKDEFLKSNMDEEGWVPITLIANFPRVRNLTSNIQLILESMRTSKVVDVQGDKLRRHDEWMKYLPSAQVQADSGSVSPSESSYNNLTADFQTTISLEKTTKDEGESSGQSQLSNGSDVAGNPK 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00042 531 MobiDBLite consensus disorder prediction 1 37 - -
Trre1g00042 531 CDD LAM 395 464 - -
Trre1g00042 531 Pfam La domain 395 450 IPR006630 -
Trre1g00042 531 MobiDBLite consensus disorder prediction 262 286 - -
Trre1g00042 531 MobiDBLite consensus disorder prediction 216 234 - -
Trre1g00042 531 ProSiteProfiles La-type HTH domain profile. 385 474 IPR006630 -
Trre1g00042 531 MobiDBLite consensus disorder prediction 513 531 - -
Trre1g00042 531 SUPERFAMILY "Winged helix" DNA-binding domain 387 472 IPR036390 -
Trre1g00042 531 MobiDBLite consensus disorder prediction 95 114 - -
Trre1g00042 531 PANTHER LUPUS LA PROTEIN-RELATED 139 478 IPR045180 -
Trre1g00042 531 MobiDBLite consensus disorder prediction 287 303 - -
Trre1g00042 531 MobiDBLite consensus disorder prediction 145 197 - -
Trre1g00042 531 Gene3D - 384 475 IPR036388 -
Trre1g00042 531 SMART la 389 465 IPR006630 -
Trre1g00042 531 MobiDBLite consensus disorder prediction 1 318 - -
Trre1g00042 531 MobiDBLite consensus disorder prediction 502 531 - -
Trre1g00042 531 MobiDBLite consensus disorder prediction 51 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00042 Trre-Chr1 324422 328537 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00042 K18757 - gmx:100785504 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00042 1 324422 328537 Trre1g00042 1 324422 328537 ECH
Trre1g00042 1 324422 328537 Trre5g05710 5 57144627 57148164 PCT