Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00038 ATGACTCAAGACGAAGAGATGAAAGATCACCCAACACCTTCCCACTCCATTACTCCACCTATTCAATCTACATTGCAAAATTTGAAGGAAATAGCATCGATCATTGAAACCGGTTCAAACTCTAAGGAAGTTCGCAGAATTTCTCGTGCTGTGCGCCTTACAATGGCGTTGAGACCCAAGCTCACAACTCCCGTTCTCTCTTCTTTCATCGATCATGTTCTTCCTCCTGCTTCTGACTCTCACTCTAGGTTATCTTCTTATCTTCCCAATCCCAAGGATGATGATCACGAGATGGAAGTGGACACTGCAACTTCTGCAGCTATTCAAGCCCCAGCCAAACACTTGTTGCCTGAGCTAGAAATTTACTGTTACTTTCTAGTGCTTCTTTTTCTTATTGATCAGAAACGATACAATGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGATCGGCTCAAGAACTTGAATAGAAGAACTGTTGATGTTATTGCTTCAAGACTGTACTTTTATTACTCATACAGCTACGAGCTTACTGGTGATCTTGCTGAAATTCGAGGCAACCTCTTTCAGTTGCACCGGATTGCTACCCTGCGACATGATGAGCTTGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTCCACTATAACCTATATGATCAGGCAGAGAAGTTGAGGTCCAAGGCTCCACGATTTGAGGCACATTCAAACCAGCAGTTCTGCCGCTATCTCTTCTACCTTGGAAAAATTCGGACCATTCAGTTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCACCAGTTGCAGCACAGGGTTTTCGGATTCAGTGTAACAAGTGGGCCATTATAGTGCGTTTACTGTTGGGAGAAATTCCTGAGAGAACTATCTTCGTGCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAACTTACTAATGCTGTTAGGATTGGTGACTTAGAGCTGTTTAGGAATGTTGCAGAGAAGTATGCCACCACTTTCAGTACAGATGGCACCAATAATTTGATTGTTCGATTGCGTCATAATGTGATCAGGACTGGTTTGCGCAACATCAGTATATCATATTCTCGCATCTCGCTGGCTGATGTAGCACAGAAGTTGAGATTGAGCTCTGCGGATCCCATTGCTGATGCTGAAAGCATCATATCAAAGGCTATCCGTGATGGGGCAATTGATGCAACATTGGATCATGCTAATAAATGGATGTTGTCCAAGGAAACTGGAGATATTTATTCTACAAATGAGCCTCAGTTGGCCTTCAATTCTCGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTTCAAGCACTGCGATTTCCAAAAAATACACACAAGGAGAAAGAAATTGCTGAGAAGCGGAGAGAGAGGCAACAACAAGAGCAAGAACTAGCGAAGCATATTGAAGAGGAAGATGATGATGATGACTTCTGA 1476 0.4322 MTQDEEMKDHPTPSHSITPPIQSTLQNLKEIASIIETGSNSKEVRRISRAVRLTMALRPKLTTPVLSSFIDHVLPPASDSHSRLSSYLPNPKDDDHEMEVDTATSAAIQAPAKHLLPELEIYCYFLVLLFLIDQKRYNEAKACSSASIDRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLGEIPERTIFVQKGMEKALRPYFELTNAVRIGDLELFRNVAEKYATTFSTDGTNNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLSSADPIADAESIISKAIRDGAIDATLDHANKWMLSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVQALRFPKNTHKEKEIAEKRRERQQQEQELAKHIEEEDDDDDF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00038 491 MobiDBLite consensus disorder prediction 456 480 - -
Trre1g00038 491 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 348 441 IPR000717 -
Trre1g00038 491 SMART PCI/PINT associated module 177 348 - -
Trre1g00038 491 Pfam PCI domain 314 418 IPR000717 -
Trre1g00038 491 Pfam Proteasome regulatory subunit C-terminal 423 489 IPR013586 GO:0000502|GO:0030234|GO:0042176
Trre1g00038 491 FunFam 26S proteasome non-ATPase regulatory subunit 3 123 446 - -
Trre1g00038 491 SUPERFAMILY "Winged helix" DNA-binding domain 351 423 IPR036390 -
Trre1g00038 491 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 30 486 - -
Trre1g00038 491 MobiDBLite consensus disorder prediction 1 21 - -
Trre1g00038 491 MobiDBLite consensus disorder prediction 77 97 - -
Trre1g00038 491 Gene3D - 245 452 - -
Trre1g00038 491 Coils Coil 457 485 - -
Trre1g00038 491 MobiDBLite consensus disorder prediction 456 491 - -
Trre1g00038 491 ProSiteProfiles PCI domain profile. 242 423 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00038 Trre-Chr1 292972 297737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00038 K03033 - gmx:100814379 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00038 1 292972 297737 Trre1g00038 1 292972 297737 ECH
Trre1g00038 1 292972 297737 Trre5g05713 5 57158391 57162095 PCT