Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00036 ATGTTGTTGGATGCCATACTTATGGCTCTCTTCTTGCCGTGTCTTGGCATGGCCGCTATCTTTATAATCTACATGTGTCTTCTCTGGTACGCAACCACTCACCCCACCGCAACCACTATCATTCTGAAGCCTGTCATCAATACAGGCCTTTCCCCTTCCGAACTACAAAAGATACCCTGTATCGTCGGTAAAGAACTGGTGACAGGTCCGGAATGTGCAGTTTGCCTGGATGACATAGGTGAAGAAGAATCAGCACGTGTGATTCCAGGTTGCAATCATTCATTTCATAAGGAATGCGCTGATACATGGCTTTCCAAACATCCAGTCTGCCCTGTTTGTAGAACTAAGCTCGATGATCCTCCTGCTGATCCTCAAAATCCATGCTAA 387 0.4625 MLLDAILMALFLPCLGMAAIFIIYMCLLWYATTHPTATTIILKPVINTGLSPSELQKIPCIVGKELVTGPECAVCLDDIGEEESARVIPGCNHSFHKECADTWLSKHPVCPVCRTKLDDPPADPQNPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00036 128 Pfam Ring finger domain 71 114 IPR001841 -
Trre1g00036 128 SMART ring_2 72 113 IPR001841 -
Trre1g00036 128 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Trre1g00036 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 120 IPR013083 -
Trre1g00036 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 5 118 - -
Trre1g00036 128 SUPERFAMILY RING/U-box 66 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00036 Trre-Chr1 281575 281961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00036 2 125 C3H Transcription Factor Family AT5G42200 49.231 7.99e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00036 K19037 - gmx:100817919 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00036 1 281575 281961 Trre1g00036 1 281575 281961 ECH
Trre1g00036 1 281575 281961 Trre5g05714 5 57164826 57165218 PCT