Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g00036 | ATGTTGTTGGATGCCATACTTATGGCTCTCTTCTTGCCGTGTCTTGGCATGGCCGCTATCTTTATAATCTACATGTGTCTTCTCTGGTACGCAACCACTCACCCCACCGCAACCACTATCATTCTGAAGCCTGTCATCAATACAGGCCTTTCCCCTTCCGAACTACAAAAGATACCCTGTATCGTCGGTAAAGAACTGGTGACAGGTCCGGAATGTGCAGTTTGCCTGGATGACATAGGTGAAGAAGAATCAGCACGTGTGATTCCAGGTTGCAATCATTCATTTCATAAGGAATGCGCTGATACATGGCTTTCCAAACATCCAGTCTGCCCTGTTTGTAGAACTAAGCTCGATGATCCTCCTGCTGATCCTCAAAATCCATGCTAA | 387 | 0.4625 | MLLDAILMALFLPCLGMAAIFIIYMCLLWYATTHPTATTIILKPVINTGLSPSELQKIPCIVGKELVTGPECAVCLDDIGEEESARVIPGCNHSFHKECADTWLSKHPVCPVCRTKLDDPPADPQNPC | 128 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g00036 | 128 | Pfam | Ring finger domain | 71 | 114 | IPR001841 | - | |
Trre1g00036 | 128 | SMART | ring_2 | 72 | 113 | IPR001841 | - | |
Trre1g00036 | 128 | ProSiteProfiles | Zinc finger RING-type profile. | 72 | 114 | IPR001841 | - | |
Trre1g00036 | 128 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 120 | IPR013083 | - | |
Trre1g00036 | 128 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 5 | 118 | - | - | |
Trre1g00036 | 128 | SUPERFAMILY | RING/U-box | 66 | 120 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g00036 | Trre-Chr1 | 281575 | 281961 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g00036 | 2 | 125 | C3H Transcription Factor Family | AT5G42200 | 49.231 | 7.99e-38 | 124 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g00036 | K19037 | - | gmx:100817919 | 189.119 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre1g00036 | 1 | 281575 | 281961 | Trre1g00036 | 1 | 281575 | 281961 | ECH | |
Trre1g00036 | 1 | 281575 | 281961 | Trre5g05714 | 5 | 57164826 | 57165218 | PCT |