Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00034 ATGGGACACTGCTTCACCAAACCACACGACAACAGAGTACCTATCTCCTATGACTATGGTGATTCACAACCCCCACAAAGAAATCAACCTCGTCAAACTCGATATCCATACCATACCACTGCTGCAAAATCAGAGCCATCTCCGTATTCTTCTGCTTCATCATCGAACGCGAATGCGAATAGTGGTCATCAACCAATATTAGGAAGACCATACATTGACATAAAGGCACTATATAGTATTGGAAAAGAACTAGGGAGGGGTCAATTTGGTGTCACTTATCTTTGCACCGAAAAGGCGACAGGAAGAAACTATGCTTGTAAGTCCATTTCAAGACGAAAGCTAATAAGAAAGAAGGAAATTGAGGATGTTAAGAGGGAAATTATGATCCTTCAGCACTTAACTGGACAACCAAACATAGTTGAGTTCAAGTGTGCTTATGAGGATAGAGAACATGTGCATTTGGTGATGGAGTTGTGTTTGGGTGGTGAGCTTTTTGATCGGATCACTGCAAAGGGTAGTTACTCTGAGCGCGAAGCTGCTTCTATATTCAAACAAATTATGAATGTGGTTCATGCTTGTCATTTTATGGGGGTTATGCATAGGGACCTTAAGCCTGAGAATTTCTTGCTTGTTAATAAGGATCTTAAGGCACCTTTGAAAGCTACTGATTTTGGATCTTCTGTTTTCATTGAAGAAGGTAAAATATATAAAGAGCTTGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAAACGGAATTATGGAAAGGAGATTGATGTCTGGAGTGCAGGAGTTATTTTATATATCCTCTTATGTGGGGTGCCTCCATTTTGGGCTGAAACCGAAAAAGGCATATTTCAAGCTATTTTGGAAGGTAAGCTCGATCTAGAGAGTGCGCCATGGCCTTCCATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGTTGAGTTATGACCCTAAGAAACGCATTACAGCTTCTGATGCCCTCGAACATCCATGGATGAAGGAAGGTGGTGAGGCATCGGACAGGCCTTTAGACAATGCTGTTTTAATTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTTCAGATGAAGAAATCAAGGGATTGAAACAAATGTTCAACAATATTGATACTGATCGAAGTGGCACAATCACATATGAAGAACTCAAATCTGGACTGTCCAAATTGGGATCCAAGCTTAATGAATCTGAAATAAAGCAGCTAATGGATGCTGCTGACGTCGATAAGAATGGAACTATTGACTATCATGAATTCATTACTGCCACTATCAATCGGCATAAACTTGAGAGGGAAGAGAATTTGTTCAAGGCTTTTCAATACTTTGACAAGGATAACAGCGGTTATGTAACAAGAGAAGAACTTAGACAAGCTTTGGCTGAATATCAAATGGGAGATGAAGCAACTATAGATGAAGTCATTGATGATGTTGACACTGACAATGATGGGAGAATTAATTACCAGGAGTTTGTAGCTATGATGAAAAAGGGGACCTTGGATAATGATGAGAAAGAGAAACCGCAATAA 1590 0.3975 MGHCFTKPHDNRVPISYDYGDSQPPQRNQPRQTRYPYHTTAAKSEPSPYSSASSSNANANSGHQPILGRPYIDIKALYSIGKELGRGQFGVTYLCTEKATGRNYACKSISRRKLIRKKEIEDVKREIMILQHLTGQPNIVEFKCAYEDREHVHLVMELCLGGELFDRITAKGSYSEREAASIFKQIMNVVHACHFMGVMHRDLKPENFLLVNKDLKAPLKATDFGSSVFIEEGKIYKELVGSAYYVAPEVLKRNYGKEIDVWSAGVILYILLCGVPPFWAETEKGIFQAILEGKLDLESAPWPSISAAAKDLIRKMLSYDPKKRITASDALEHPWMKEGGEASDRPLDNAVLIRMKQFRAMNKMKKLALKVIAENLSDEEIKGLKQMFNNIDTDRSGTITYEELKSGLSKLGSKLNESEIKQLMDAADVDKNGTIDYHEFITATINRHKLEREENLFKAFQYFDKDNSGYVTREELRQALAEYQMGDEATIDEVIDDVDTDNDGRINYQEFVAMMKKGTLDNDEKEKPQ 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00034 529 SMART serkin_6 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00034 529 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Trre1g00034 529 ProSiteProfiles EF-hand calcium-binding domain profile. 487 521 IPR002048 GO:0005509
Trre1g00034 529 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Trre1g00034 529 FunFam Calcium-dependent protein kinase 1 344 519 - -
Trre1g00034 529 MobiDBLite consensus disorder prediction 1 63 - -
Trre1g00034 529 Pfam Protein kinase domain 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00034 529 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Trre1g00034 529 Gene3D - 348 522 - -
Trre1g00034 529 SMART efh_1 490 518 IPR002048 GO:0005509
Trre1g00034 529 SMART efh_1 419 447 IPR002048 GO:0005509
Trre1g00034 529 SMART efh_1 455 483 IPR002048 GO:0005509
Trre1g00034 529 SMART efh_1 383 411 IPR002048 GO:0005509
Trre1g00034 529 MobiDBLite consensus disorder prediction 21 63 - -
Trre1g00034 529 SUPERFAMILY EF-hand 375 516 IPR011992 -
Trre1g00034 529 FunFam calcium-dependent protein kinase 1 164 343 - -
Trre1g00034 529 Gene3D Transferase(Phosphotransferase) domain 1 164 347 - -
Trre1g00034 529 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Trre1g00034 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 74 511 - -
Trre1g00034 529 Gene3D Phosphorylase Kinase; domain 1 80 163 - -
Trre1g00034 529 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Trre1g00034 529 FunFam Calcium-dependent protein kinase 1 80 163 - -
Trre1g00034 529 SUPERFAMILY Protein kinase-like (PK-like) 78 346 IPR011009 -
Trre1g00034 529 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Trre1g00034 529 Pfam EF-hand domain pair 384 444 IPR002048 GO:0005509
Trre1g00034 529 Pfam EF-hand domain pair 453 516 IPR002048 GO:0005509
Trre1g00034 529 CDD STKc_CAMK 78 335 - -
Trre1g00034 529 ProSitePatterns Protein kinases ATP-binding region signature. 84 117 IPR017441 GO:0005524
Trre1g00034 529 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00034 529 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Trre1g00034 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00034 Trre-Chr1 272351 275869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00034 1 529 EF-hand Containing Proteins AT3G20410 64.576 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre1g00034 Pkinase 6.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00034 K13412 - gmx:100816157 746.503