Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00025 ATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCCTTTTCCACATTGGATGGATATTCATTAGATGTTTTTGTTGTTGATGGTTGGGCAGGCCAGGATACCGAGAGACTCAAGCATGAAGTGACAAAGAAAATGCAGAAACTTGAGGAAGATCAACGGTTCCCCCTTCTCCCTTTTCGCAAGGAGACTGGGATACTAAAACATATTCCAACAAAGAAAATTAAGAAAATCGAGCCCTGGTGCAGTCTTCCTAAGGAGAAACCAGAGAAAATTTGGATGAACTATATCTCTAACCATGTAAACAAACCCATCAGTAGAAATTATGTGTGGGAAATTGATGGAAGCTGTTTAAGATATGAGAAGAAAATTGGCTCCGGATCAGTCAGTGATTTGTACAAAGGCACTTACATTAATAAAGATGTGGCCATCAAAGTATTTAAGAATGGTAGTCTAAATGAAAATATGCAGAGGGAGTTTTCCCAGGAAATATTTATCACGAGTAAAATTCAGCATAAGAATGTTATCAAATTTATCGGTGCCTGTGCAAAACCAAACTTTCATCTTGTCACAGAATATATGTCTGGTGGAAATATGTATGACTTTCTGCATATACAGAAGGTTGTACTTACTCTTCCTTCTTTGCTCAAAATAGCAATTGATGTCTCCCAAGGAGTGAATTATTTACACAAAAATAACATTATACATCGAGACCTCAAAACTGCAAATCTTTTGATGGATGAGAAAGGGGTAGTCAAAGTCGCTGATTTTGGTGTAGCCAGATTGCAAAATCAATCTGGTATAATGACTGCAGAAACTGGAACATACCGATGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAACCACAAAGCTGATGTTTTCAGCTTTGGGGTTATTCTTTGGGAGCTTCTCACAAGAAAGCTTCCCTATGAAGATCTATCCCCATTGCAAGCAGCAATTGGAGTAGTACATAAGGATTTGAGGCCTGAAATCCCAAGGGATACTCATCCAAAATTAGTGGAATTGATTCACCGGTGCTGGCATAAAGATCCGTGTTTAAGGCCTGATTTCTCAGAAATTCTCAAGTTTCTACAGCACATTAACAACATGATAGCAGGGAAGAAGAAGGTTAAGGTTAAGGCTAAGGGAATGCATGAGCACGACTAG 1236 0.3883 MHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVTKKMQKLEEDQRFPLLPFRKETGILKHIPTKKIKKIEPWCSLPKEKPEKIWMNYISNHVNKPISRNYVWEIDGSCLRYEKKIGSGSVSDLYKGTYINKDVAIKVFKNGSLNENMQREFSQEIFITSKIQHKNVIKFIGACAKPNFHLVTEYMSGGNMYDFLHIQKVVLTLPSLLKIAIDVSQGVNYLHKNNIIHRDLKTANLLMDEKGVVKVADFGVARLQNQSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGVILWELLTRKLPYEDLSPLQAAIGVVHKDLRPEIPRDTHPKLVELIHRCWHKDPCLRPDFSEILKFLQHINNMIAGKKKVKVKAKGMHEHD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00025 411 SMART serkin_6 139 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00025 411 ProSiteProfiles Protein kinase domain profile. 139 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00025 411 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 73 395 - -
Trre1g00025 411 CDD STKc_MAP3K-like 145 387 - -
Trre1g00025 411 PRINTS Tyrosine kinase catalytic domain signature 249 267 IPR001245 GO:0004672|GO:0006468
Trre1g00025 411 PRINTS Tyrosine kinase catalytic domain signature 212 225 IPR001245 GO:0004672|GO:0006468
Trre1g00025 411 PRINTS Tyrosine kinase catalytic domain signature 314 336 IPR001245 GO:0004672|GO:0006468
Trre1g00025 411 PRINTS Tyrosine kinase catalytic domain signature 295 305 IPR001245 GO:0004672|GO:0006468
Trre1g00025 411 PRINTS Tyrosine kinase catalytic domain signature 358 380 IPR001245 GO:0004672|GO:0006468
Trre1g00025 411 SUPERFAMILY ACT-like 2 73 IPR045865 -
Trre1g00025 411 ProSiteProfiles ACT domain profile. 3 81 IPR002912 -
Trre1g00025 411 Pfam Protein tyrosine and serine/threonine kinase 140 387 IPR001245 GO:0004672|GO:0006468
Trre1g00025 411 Gene3D Transferase(Phosphotransferase) domain 1 217 410 - -
Trre1g00025 411 FunFam Kinase suppressor of Ras 1 129 215 - -
Trre1g00025 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Trre1g00025 411 Gene3D Phosphorylase Kinase; domain 1 130 216 - -
Trre1g00025 411 Coils Coil 53 73 - -
Trre1g00025 411 SUPERFAMILY Protein kinase-like (PK-like) 114 387 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00025 Trre-Chr1 220964 225577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00025 1 406 MAP Kinase Kinase Kinase AT4G35780 54.545 4.38e-159 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre1g00025 PK_Tyr_Ser-Thr 1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00025 - - gmx:100818047 507.294