Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00024 ATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCCTTTTCCACATTGGATGGATATTCATTAGATGTTTTTGTTGTTGATGGTTGGGCAGGCCAGGATACCGAGAGACTCAAGCATGAAGTGACAAAGAAAATGCAGAAACTTGAGGAAGATCAACGGTTCCCCCTTCTCCCTTTTCGCAAGGAGACTGGGATACTAAAACATATTCCAACAAAGAAAATTAAGAAAATCGAGCAGCCCTGGTGCAGTCTTCCTAAGGAGAAACCAGAGAAAATTTGGATGAACTATATCTCTAACCATGTAAACAAACCCATCAGTAGAAATTATGTGTGGGAAATTGATGGAAGCTGTTTAAGATATGAGAAGAAAATTGGCTCCGGATCAGTCAGTGATTTGTACAAAGGCACTTACATTAATAAAGATGTGGCCATCAAAGTATTTAAGAATGGTAGTCTAAATGAAAATATGCAGAGGGAGTTTTCCCAGGAAATATTTATCACGAGTAAAATTCAGCATAAGAATGTTATCAAATTTATCGGTGCCTGTGCAAAACCAAACTTTCATCTTGTCACAGAATATATGTCTGGTGGAAATATGTATGACTTTCTGCATATACAGAAGGTTGTACTTACTCTTCCTTCTTTGCTCAAAATAGCAATTGATGTCTCCCAAGGAGTGAATTATTTACACAAAAATAACATTATACATCGAGACCTCAAAACTGCAAATCTTTTGATGGATGAGAAAGGGGTAGTCAAAGTCGCTGATTTTGGTGTAGCCAGATTGCAAAATCAATCTGGTATAATGACTGCAGAAACTGGAACATACCGATGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAACCACAAAGCTGATGTTTTCAGCTTTGGGGTTATTCTTTGGGAGCTTCTCACAAGAAAGCTTCCCTATGAAGATCTATCCCCATTGCAAGCAGCAATTGGAGTAGTACATAAGGATTTGAGGCCTGAAATCCCAAGGGATACTCATCCAAAATTAGTGGAATTGATTCACCGGTGCTGGCATAAAGATCCGTGTTTAAGGCCTGATTTCTCAGAAATTCTCAAGTTTCTACAGCACATTAACAACATGATAGCAGGGAAGAAGAAGGTTAAGGTTAAGGCTAAGGGAATGCATGAGCACGACTAG 1239 0.389 MHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVTKKMQKLEEDQRFPLLPFRKETGILKHIPTKKIKKIEQPWCSLPKEKPEKIWMNYISNHVNKPISRNYVWEIDGSCLRYEKKIGSGSVSDLYKGTYINKDVAIKVFKNGSLNENMQREFSQEIFITSKIQHKNVIKFIGACAKPNFHLVTEYMSGGNMYDFLHIQKVVLTLPSLLKIAIDVSQGVNYLHKNNIIHRDLKTANLLMDEKGVVKVADFGVARLQNQSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGVILWELLTRKLPYEDLSPLQAAIGVVHKDLRPEIPRDTHPKLVELIHRCWHKDPCLRPDFSEILKFLQHINNMIAGKKKVKVKAKGMHEHD 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00024 412 Pfam Protein tyrosine and serine/threonine kinase 141 388 IPR001245 GO:0004672|GO:0006468
Trre1g00024 412 ProSiteProfiles Protein kinase domain profile. 140 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00024 412 Gene3D Transferase(Phosphotransferase) domain 1 218 411 - -
Trre1g00024 412 FunFam Kinase suppressor of Ras 1 130 216 - -
Trre1g00024 412 SMART serkin_6 140 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00024 412 SUPERFAMILY ACT-like 2 73 IPR045865 -
Trre1g00024 412 SUPERFAMILY Protein kinase-like (PK-like) 115 388 IPR011009 -
Trre1g00024 412 ProSiteProfiles ACT domain profile. 3 81 IPR002912 -
Trre1g00024 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Trre1g00024 412 Coils Coil 53 73 - -
Trre1g00024 412 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 73 396 - -
Trre1g00024 412 PRINTS Tyrosine kinase catalytic domain signature 296 306 IPR001245 GO:0004672|GO:0006468
Trre1g00024 412 PRINTS Tyrosine kinase catalytic domain signature 359 381 IPR001245 GO:0004672|GO:0006468
Trre1g00024 412 PRINTS Tyrosine kinase catalytic domain signature 315 337 IPR001245 GO:0004672|GO:0006468
Trre1g00024 412 PRINTS Tyrosine kinase catalytic domain signature 250 268 IPR001245 GO:0004672|GO:0006468
Trre1g00024 412 PRINTS Tyrosine kinase catalytic domain signature 213 226 IPR001245 GO:0004672|GO:0006468
Trre1g00024 412 Gene3D Phosphorylase Kinase; domain 1 131 217 - -
Trre1g00024 412 CDD STKc_MAP3K-like 146 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00024 Trre-Chr1 220964 225577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00024 1 407 MAP Kinase Kinase Kinase AT4G35780 54.412 2.07e-157 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre1g00024 PK_Tyr_Ser-Thr 1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00024 - - vra:106761427 507.294