Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00023 ATGGTTGGAGATACAGAAAGTTGCAACGGTAGAGGTTTGATTAACTGTGGATGGAATAATGGTCGACTTGAGAGTCTAAAAGTCGAGGTTTACTACGAGATTCTGAGTCGACTCAGAGAATTGAATGTGCCAGAGGTTACTCTTCCTTATTTTGAAGATGAGCTTTGGGTTCACTTCAATACCCTTCCAACTAGGTATGCACTGGAAATGAATGTTGAGAAGGCCCAAGATGTTCTTATGCATAAAAATTTACAAAATATGGCACGAACTATTGCTTGTAGACCTGCAATTGAAGTCCGACTCGTCCAGGTTCGTTCTGCTTCTGGTGTGCATTCTAGCAAATCCATTAATTCCAACTTACAGAAAGAAATCAAGCTCCATCACTCTGATTTTCCATGCAACACAAGACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCCTTTTCCACATTGGATGGATATTCATTAGATGTTTTTGTTGTTGATGGTTGGGCAGGCCAGGATACCGAGAGACTCAAGCATGAAGTGACAAAGAAAATGCAGAAACTTGAGGAAGATCAACGGTTCCCCCTTCTCCCTTTTCGCAAGGAGACTGGGATACTAAAACATATTCCAACAAAGAAAATTAAGAAAATCGAGCCCTGGTGCAGTCTTCCTAAGGAGAAACCAGAGAAAATTTGGATGAACTATATCTCTAACCATGTAAACAAACCCATCAGTAGAAATTATGTGTGGGAAATTGATGGAAGCTGTTTAAGATATGAGAAGAAAATTGGCTCCGGATCAGTCAGTGATTTGTACAAAGGCACTTACATTAATAAAGATGTGGCCATCAAAGTATTTAAGAATGGTAGTCTAAATGAAAATATGCAGAGGGAGTTTTCCCAGGAAATATTTATCACGAGTAAAATTCAGCATAAGAATGTTATCAAATTTATCGGTGCCTGTGCAAAACCAAACTTTCATCTTGTCACAGAATATATGTCTGGTGGAAATATGTATGACTTTCTGCATATACAGAAGGTTGTACTTACTCTTCCTTCTTTGCTCAAAATAGCAATTGATGTCTCCCAAGGAGTGAATTATTTACACAAAAATAACATTATACATCGAGACCTCAAAACTGCAAATCTTTTGATGGATGAGAAAGGGGTAGTCAAAGTCGCTGATTTTGGTGTAGCCAGATTGCAAAATCAATCTGGTATAATGACTGCAGAAACTGGAACATACCGATGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAACCACAAAGCTGATGTTTTCAGCTTTGGGGTTATTCTTTGGGAGCTTCTCACAAGAAAGCTTCCCTATGAAGATCTATCCCCATTGCAAGCAGCAATTGGAGTAGTACATAAGGATATTGTATCACTAAAGAGAATTCAAGGATGA 1488 0.3871 MVGDTESCNGRGLINCGWNNGRLESLKVEVYYEILSRLRELNVPEVTLPYFEDELWVHFNTLPTRYALEMNVEKAQDVLMHKNLQNMARTIACRPAIEVRLVQVRSASGVHSSKSINSNLQKEIKLHHSDFPCNTRPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVTKKMQKLEEDQRFPLLPFRKETGILKHIPTKKIKKIEPWCSLPKEKPEKIWMNYISNHVNKPISRNYVWEIDGSCLRYEKKIGSGSVSDLYKGTYINKDVAIKVFKNGSLNENMQREFSQEIFITSKIQHKNVIKFIGACAKPNFHLVTEYMSGGNMYDFLHIQKVVLTLPSLLKIAIDVSQGVNYLHKNNIIHRDLKTANLLMDEKGVVKVADFGVARLQNQSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGVILWELLTRKLPYEDLSPLQAAIGVVHKDIVSLKRIQG 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00023 495 Pfam Protein kinase domain 278 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00023 495 CDD STKc_MAP3K-like 282 485 - -
Trre1g00023 495 SMART serkin_6 276 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00023 495 Gene3D Phosphorylase Kinase; domain 1 267 353 - -
Trre1g00023 495 ProSiteProfiles ACT domain profile. 140 218 IPR002912 -
Trre1g00023 495 ProSiteProfiles Protein kinase domain profile. 276 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00023 495 SUPERFAMILY Protein kinase-like (PK-like) 264 484 IPR011009 -
Trre1g00023 495 Gene3D Transferase(Phosphotransferase) domain 1 354 492 - -
Trre1g00023 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Trre1g00023 495 FunFam Kinase suppressor of Ras 1 266 352 - -
Trre1g00023 495 PRINTS Tyrosine kinase catalytic domain signature 432 442 IPR001245 GO:0004672|GO:0006468
Trre1g00023 495 PRINTS Tyrosine kinase catalytic domain signature 349 362 IPR001245 GO:0004672|GO:0006468
Trre1g00023 495 PRINTS Tyrosine kinase catalytic domain signature 451 473 IPR001245 GO:0004672|GO:0006468
Trre1g00023 495 PRINTS Tyrosine kinase catalytic domain signature 386 404 IPR001245 GO:0004672|GO:0006468
Trre1g00023 495 Coils Coil 190 210 - -
Trre1g00023 495 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 130 484 - -
Trre1g00023 495 SUPERFAMILY ACT-like 137 210 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00023 Trre-Chr1 219708 225186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00023 4 487 MAP Kinase Kinase Kinase AT2G17700 48.846 1.93e-171 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre1g00023 Pkinase 5.5e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00023 - - gmx:100818047 576.244