Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00022 ATGGTTGGAGATACAGAAAGTTGCAACGGTAGAGGTTTGATTAACTGTGGATGGAATAATGGTCGACTTGAGAGTCTAAAAGTCGAGGTTTACTACGAGATTCTGAGTCGACTCAGAGAATTGAATGTGCCAGAGGTTACTCTTCCTTATTTTGAAGATGAGCTTTGGGTTCACTTCAATACCCTTCCAACTAGGTATGCACTGGAAATGAATGTTGAGAAGGCCCAAGATGTTCTTATGCATAAAAATTTACAAAATATGGCACGAACTATTGCTTGTAGACCTGCAATTGAAGTCCGACTCGTCCAGGTTCGTTCTGCTTCTGGTGTGCATTCTAGCAAATCCATTAATTCCAACTTACAGAAAGAAATCAAGCTCCATCACTCTGATTTTCCATGCAACACAAGACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCCTTTTCCACATTGGATGGATATTCATTAGATGTTTTTGTTGTTGATGGTTGGGCAGGCCAGGATACCGAGAGACTCAAGCATGAAGTGACAAAGAAAATGCAGAAACTTGAGGAAGATCAACGGTTCCCCCTTCTCCCTTTTCGCAAGGAGACTGGGATACTAAAACATATTCCAACAAAGAAAATTAAGAAAATCGAGCCCTGGTGCAGTCTTCCTAAGGAGAAACCAGAGAAAATTTGGATGAACTATATCTCTAACCATGTAAACAAACCCATCAGTAGAAATTATGTGTGGGAAATTGATGGAAGCTGTTTAAGATATGAGAAGAAAATTGGCTCCGGATCAGTCAGTGATTTGTACAAAGGCACTTACATTAATAAAGATGTGGCCATCAAAGTATTTAAGAATGGTAGTCTAAATGAAAATATGCAGAGGGAGTTTTCCCAGGAAATATTTATCACGAGTAAAATTCAGCATAAGAATGTTATCAAATTTATCGGTGCCTGTGCAAAACCAAACTTTCATCTTGTCACAGAATATATGTCTGGTGGAAATATGTATGACTTTCTGCATATACAGAAGGTTGTACTTACTCTTCCTTCTTTGCTCAAAATAGCAATTGATGTCTCCCAAGGAGTGAATTATTTACACAAAAATAACATTATACATCGAGACCTCAAAACTGCAAATCTTTTGATGGATGAGAAAGGGGTAGTCAAAGTCGCTGATTTTGGTGTAGCCAGATTGCAAAATCAATCTGGTATAATGACTGCAGAAACTGGAACATACCGATGGATGGCTCCAGAGCTTCCCTATGAAGATCTATCCCCATTGCAAGCAGCAATTGGAGTAGTACATAAGGATTTGAGGCCTGAAATCCCAAGGGATACTCATCCAAAATTAGTGGAATTGATTCACCGGTGCTGGCATAAAGATCCGTGTTTAAGGCCTGATTTCTCAGAAATTCTCAAGTTTCTACAGCACATTAACAACATGATAGCAGGGAAGAAGAAGGTTAAGGTTAAGGCTAAGGGAATGCATGAGCACGACTAG 1566 0.3934 MVGDTESCNGRGLINCGWNNGRLESLKVEVYYEILSRLRELNVPEVTLPYFEDELWVHFNTLPTRYALEMNVEKAQDVLMHKNLQNMARTIACRPAIEVRLVQVRSASGVHSSKSINSNLQKEIKLHHSDFPCNTRPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVTKKMQKLEEDQRFPLLPFRKETGILKHIPTKKIKKIEPWCSLPKEKPEKIWMNYISNHVNKPISRNYVWEIDGSCLRYEKKIGSGSVSDLYKGTYINKDVAIKVFKNGSLNENMQREFSQEIFITSKIQHKNVIKFIGACAKPNFHLVTEYMSGGNMYDFLHIQKVVLTLPSLLKIAIDVSQGVNYLHKNNIIHRDLKTANLLMDEKGVVKVADFGVARLQNQSGIMTAETGTYRWMAPELPYEDLSPLQAAIGVVHKDLRPEIPRDTHPKLVELIHRCWHKDPCLRPDFSEILKFLQHINNMIAGKKKVKVKAKGMHEHD 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00022 521 FunFam Kinase suppressor of Ras 1 266 352 - -
Trre1g00022 521 SMART serkin_6 276 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00022 521 ProSiteProfiles ACT domain profile. 140 218 IPR002912 -
Trre1g00022 521 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 154 505 - -
Trre1g00022 521 Gene3D Phosphorylase Kinase; domain 1 267 352 - -
Trre1g00022 521 Gene3D Transferase(Phosphotransferase) domain 1 445 520 - -
Trre1g00022 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Trre1g00022 521 Pfam Protein kinase domain 278 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00022 521 Gene3D Transferase(Phosphotransferase) domain 1 353 444 - -
Trre1g00022 521 SUPERFAMILY ACT-like 137 210 IPR045865 -
Trre1g00022 521 ProSiteProfiles Protein kinase domain profile. 276 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00022 521 SUPERFAMILY Protein kinase-like (PK-like) 251 497 IPR011009 -
Trre1g00022 521 Coils Coil 190 210 - -
Trre1g00022 521 Pfam Protein tyrosine and serine/threonine kinase 442 497 IPR001245 GO:0004672|GO:0006468
Trre1g00022 521 CDD STKc_MAP3K-like 282 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00022 Trre-Chr1 219708 225577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00022 6 516 MAP Kinase Kinase Kinase AT4G35780 45.581 8.19e-168 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre1g00022 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00022 - - gmx:100818047 576.244