Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00021 ATGGTTGGAGATACAGAAAGTTGCAACGGTAGAGGTTTGATTAACTGTGGATGGAATAATGGTCGACTTGAGAGTCTAAAAGTCGAGGTTTACTACGAGATTCTGAGTCGACTCAGAGAATTGAATGTGCCAGAGGTTACTCTTCCTTATTTTGAAGATGAGCTTTGGGTTCACTTCAATACCCTTCCAACTAGGTATGCACTGGAAATGAATGTTGAGAAGGCCCAAGATGTTCTTATGCATAAAAATTTACAAAATATGGCACGAACTATTGCTTGTAGACCTGCAATTGAAGTCCGACTCGTCCAGGTTCGTTCTGCTTCTGGTGTGCATTCTAGCAAATCCATTAATTCCAACTTACAGAAAGAAATCAAGCTCCATCACTCTGATTTTCCATGCAACACAAGACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCCTTTTCCACATTGGATGGATATTCATTAGATGTTTTTGTTGTTGATGGTTGGGCAGGCCAGGATACCGAGAGACTCAAGCATGAAGTGACAAAGAAAATGCAGAAACTTGAGGAAGATCAACGGTTCCCCCTTCTCCCTTTTCGCAAGGAGACTGGGATACTAAAACATATTCCAACAAAGAAAATTAAGAAAATCGAGCCCTGGTGCAGTCTTCCTAAGGAGAAACCAGAGAAAATTTGGATGAACTATATCTCTAACCATGTAAACAAACCCATCAGTAGAAATTATGTGTGGGAAATTGATGGAAGCTGTTTAAGATATGAGAAGAAAATTGGCTCCGGATCAGTCAGTGATTTGTACAAAGGCACTTACATTAATAAAGATGTGGCCATCAAAGTATTTAAGAATGGTAGTCTAAATGAAAATATGCAGAGGGAGTTTTCCCAGGAAATATTTATCACGAGTAAAATTCAGCATAAGAATGTTATCAAATTTATCGGTGCCTGTGCAAAACCAAACTTTCATCTTGTCACAGAATATATGTCTGGTGGAAATATGTATGACTTTCTGCATATACAGAAGGTTGTACTTACTCTTCCTTCTTTGCTCAAAATAGCAATTGATGTCTCCCAAGGAGTGAATTATTTACACAAAAATAACATTATACATCGAGACCTCAAAACTGCAAATCTTTTGATGGATGAGAAAGGGGTAGTCAAAGTCGCTGATTTTGGTGTAGCCAGATTGCAAAATCAATCTGGTATAATGACTGCAGAAACTGGAACATACCGATGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAACCACAAAGCTGATGTTTTCAGCTTTGGGGTTATTCTTTGGGAGCTTCTCACAAGAAAGCTTCCCTATGAAGATCTATCCCCATTGCAAGCAGCAATTGGAGTAGTACATAAGGATTTGAGGCCTGAAATCCCAAGGGATACTCATCCAAAATTAGTGGAATTGATTCACCGGTGCTGGCATAAAGATCCGTGTTTAAGGCCTGATTTCTCAGAAATTCTCAAGTTTCTACAGCACATTAACAACATGATAGCAGGGAAGAAGAAGGTTAAGGTTAAGGCTAAGGGAATGCATGAGCACGACTAG 1647 0.3928 MVGDTESCNGRGLINCGWNNGRLESLKVEVYYEILSRLRELNVPEVTLPYFEDELWVHFNTLPTRYALEMNVEKAQDVLMHKNLQNMARTIACRPAIEVRLVQVRSASGVHSSKSINSNLQKEIKLHHSDFPCNTRPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVTKKMQKLEEDQRFPLLPFRKETGILKHIPTKKIKKIEPWCSLPKEKPEKIWMNYISNHVNKPISRNYVWEIDGSCLRYEKKIGSGSVSDLYKGTYINKDVAIKVFKNGSLNENMQREFSQEIFITSKIQHKNVIKFIGACAKPNFHLVTEYMSGGNMYDFLHIQKVVLTLPSLLKIAIDVSQGVNYLHKNNIIHRDLKTANLLMDEKGVVKVADFGVARLQNQSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGVILWELLTRKLPYEDLSPLQAAIGVVHKDLRPEIPRDTHPKLVELIHRCWHKDPCLRPDFSEILKFLQHINNMIAGKKKVKVKAKGMHEHD 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00021 548 SUPERFAMILY Protein kinase-like (PK-like) 251 524 IPR011009 -
Trre1g00021 548 Gene3D Transferase(Phosphotransferase) domain 1 354 547 - -
Trre1g00021 548 ProSiteProfiles ACT domain profile. 140 218 IPR002912 -
Trre1g00021 548 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 130 532 - -
Trre1g00021 548 SMART serkin_6 276 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00021 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Trre1g00021 548 CDD STKc_MAP3K-like 282 524 - -
Trre1g00021 548 PRINTS Tyrosine kinase catalytic domain signature 349 362 IPR001245 GO:0004672|GO:0006468
Trre1g00021 548 PRINTS Tyrosine kinase catalytic domain signature 432 442 IPR001245 GO:0004672|GO:0006468
Trre1g00021 548 PRINTS Tyrosine kinase catalytic domain signature 495 517 IPR001245 GO:0004672|GO:0006468
Trre1g00021 548 PRINTS Tyrosine kinase catalytic domain signature 386 404 IPR001245 GO:0004672|GO:0006468
Trre1g00021 548 PRINTS Tyrosine kinase catalytic domain signature 451 473 IPR001245 GO:0004672|GO:0006468
Trre1g00021 548 FunFam Kinase suppressor of Ras 1 266 352 - -
Trre1g00021 548 ProSiteProfiles Protein kinase domain profile. 276 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00021 548 Coils Coil 190 210 - -
Trre1g00021 548 Pfam Protein tyrosine and serine/threonine kinase 277 524 IPR001245 GO:0004672|GO:0006468
Trre1g00021 548 Gene3D Phosphorylase Kinase; domain 1 267 353 - -
Trre1g00021 548 SUPERFAMILY ACT-like 137 210 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00021 Trre-Chr1 219708 225577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00021 4 527 MAP Kinase Kinase Kinase AT2G17700 49.643 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre1g00021 PK_Tyr_Ser-Thr 2.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00021 - - gmx:100818047 636.721