Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00020 ATGGGTAACTCCACCAGTGAAGCTGATCAAACCCAAACCAATCAACCAAATGATCAAGGGCCACCTCCACTTCTGCGAGATGGAAAGGAAATACTTTTTCAGGCATTCAACTGGGACTCTCACAAATTCAATTGGTGGCAAAATTTAGAAACCAAACTTCCTGACATAGCTAAATCTGGAATCACTTCAGCATGGTTGCCACCACCAACTCATTCCTTCTCCCCCCAAGGCTACACCCCTCAGAACCTTTACTCTCTTAATAGTAAATATGGTTCTGAGCATCAATTAAAAGCTTTACTTCATAAGATGAAGCACCACAAAGTCAGACCAATGGCTGACATAGTTATCAATCATCGTGTTGGCACCGTCCAAGGACATGGAGGGACGTATAATCGTTTTGATGGAATTCCATTATCCTGGGATGAACATGCTGTAACATCATCTACTGGTGGACTGGGTAATCCAAACACTGGGGCCATTTTCCATGGCTTTCCCAATATCGACCATACTCAAGATTTTGTCAGAAAGGATATCACAGCATGGCTTCAGTGGCTACGCCATAAAGTAGGCTTTCAGGATTTTCGTTTTGATTATGCAAAAGGCTATTCTCCAAAATATGTGAAAGAATATATTCAAGGAGCAAAACCATTGTTCTCTGTTGGGGAGTATTGGGATACTTGCAACTACAAGGGTTCCAGTTTGGACTATAACCAAGATAGCCATAGGCAACGAATAATCGATTGGATTGATGGCACTGGACAGCTTTCAACTGCATTTGACTTCACAACAAAGGGAATTCTCCAGGAAGCTGTCAAGAGAGAATTTTGGCGTCTGCGTGATGCTCAAGGGAAGCCACCTGGTGTGATTGGGTGGTGGCCTTCAAGATCAGTTACATTTGTAGACAATCACGATACTGGCTCAACTCAGGCTCATTGGCCCTTCCCCTCTGATCATGTTATGGAGGGGTATGCATATATATTGACTCATCCTGGGACACCAACAATTTTCTATGACCACTTTTATGACTGGAGCAACTCAGTTCATGAGCAGATTGTGAAGTTGATTGACACTCGCAAGCGTCAAGGTATTCATAGCAGATCACCAATTAGGATCCTGGAGGCCAAGCACAATGTTTACTCTGCAATCATCGGGGAGAAGCTCTGCATGAAGATTGGAGATGGTTCATGGTGCCCATCTGGGAGGGAATGGACACTATCAACCAGTGGCCATAACTATGCTGTATGGCACAAGTAG 1254 0.4386 MGNSTSEADQTQTNQPNDQGPPPLLRDGKEILFQAFNWDSHKFNWWQNLETKLPDIAKSGITSAWLPPPTHSFSPQGYTPQNLYSLNSKYGSEHQLKALLHKMKHHKVRPMADIVINHRVGTVQGHGGTYNRFDGIPLSWDEHAVTSSTGGLGNPNTGAIFHGFPNIDHTQDFVRKDITAWLQWLRHKVGFQDFRFDYAKGYSPKYVKEYIQGAKPLFSVGEYWDTCNYKGSSLDYNQDSHRQRIIDWIDGTGQLSTAFDFTTKGILQEAVKREFWRLRDAQGKPPGVIGWWPSRSVTFVDNHDTGSTQAHWPFPSDHVMEGYAYILTHPGTPTIFYDHFYDWSNSVHEQIVKLIDTRKRQGIHSRSPIRILEAKHNVYSAIIGEKLCMKIGDGSWCPSGREWTLSTSGHNYAVWHK 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00020 417 Gene3D - 363 417 IPR013780 -
Trre1g00020 417 SMART aamy 30 370 IPR006047 GO:0005975
Trre1g00020 417 Gene3D Glycosidases 30 362 - -
Trre1g00020 417 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g00020 417 Pfam Alpha amylase, catalytic domain 49 119 IPR006047 GO:0005975
Trre1g00020 417 PANTHER ALPHA-AMYLASE 32 416 - -
Trre1g00020 417 Pfam Alpha-amylase C-terminal beta-sheet domain 360 416 IPR012850 GO:0004556|GO:0005509|GO:0005975
Trre1g00020 417 SMART alpha-amyl_c2 359 417 IPR012850 GO:0004556|GO:0005509|GO:0005975
Trre1g00020 417 PIRSF Alpha-amylase_plant 22 417 IPR013775 GO:0004556|GO:0005509|GO:0005975
Trre1g00020 417 SUPERFAMILY (Trans)glycosidases 37 347 IPR017853 -
Trre1g00020 417 PRINTS Alpha-amylase signature 191 202 IPR006046 GO:0004556|GO:0005975|GO:0043169
Trre1g00020 417 PRINTS Alpha-amylase signature 294 306 IPR006046 GO:0004556|GO:0005975|GO:0043169
Trre1g00020 417 PRINTS Alpha-amylase signature 107 118 IPR006046 GO:0004556|GO:0005975|GO:0043169
Trre1g00020 417 CDD AmyAc_arch_bac_plant_AmyA 31 369 - -
Trre1g00020 417 MobiDBLite consensus disorder prediction 1 25 - -
Trre1g00020 417 SUPERFAMILY Glycosyl hydrolase domain 363 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00020 Trre-Chr1 208901 212125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00020 12 417 Glycoside Hydrolase AT1G76130 74.138 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00020 K01176 - gmx:100813490 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00020 1 208901 212125 Trre1g00020 1 208901 212125 ECH