Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00018 ATGGGTTCGCTCTCTGCTTTCCATGATGAGGCCATCCAATATCCCATTGCTCGCAGAGACCACTCCGTCGTTGACAACTATCACGGTGTTAACATTCCCGACCCTTACCGGTGGCTTGAAAATCCTGATGCACAACAAGTCAAAGATTTCGTACAGCAACAGATTGTGTTGACGGATTCAGTGCTCAAAACATGCGATTATTTTAGAACTAAACTTGGTGACACAATCAAAAAGGTGTTTGATCATCCTCGTTATTCTGCTCCTTTCAAAAGAGGGCTTAACACCTACTTTTACTTCCACAATACTGGTCTTCAACCTCAGAGCGTCCTTTATGTCCAGGATGGTTTGGAGGGTCAACCACATGTTTTGCTTGATCCCAATCTTCTCAGTCATGATGGCACTGTTTCACTCAACACTTTCTCTGTTAGCAAAGATGCTACCTTCTTCGCTTATGGACTCAGTTCAAGTGGTAGTGACTGGCTCACCATAAAGGTCATGAGTCTTCATCACAACCTTCTTCAGCCTGATACTTTGTCCTGGGTTAAGTTTTCCTCTATTAGTTGGACGCATGATACCAAAGGTTTTTTTTACACCCGCTATCCTGCTCCAACAATCAAAAAAGATGGGGAACTGGTTGATGCTGGGACTGAGACTGATGCCAACCTTTATCATGAACTCTATTACCATTTTCTCGGTACTGATCAGTCACAGGATATTCTGTGCTGGAGAGATCCTCACAACCCTAAATATATGTTTGGAACAAGCATCACTGATGACGGAAAGTATGTTCTTCTCTCTATTGAAGAGGGGTGTGATCCGGTTAACAAAATATACTACTTTGACTTGTCCAAACTACCTAATGGTCTAAAAGGTTTTCGAAATGAAAATTCCTTACTCCCTTTTGTCAAGCTTATTGATAACTTTGATGCCAAGTATCAACCCATTGCAAATGATGACACTGTGTTTACATTTTTAACCAATAAAGATGCTCCAAAATATAAACTAGTCCGAGTAGATTTGAAAGAACCAAATACTTGGACGGATGTTATCCAAGAATCTGAAAAAGATGTACTCGAGTCAGCATATGCTGTGAACGGCAACCAACTGATAGTGAGCTACTTGAGTGATGTGAAATATGTTCTGCAAGTAAGAGACTTAGAAACAGGTTCCCTGCAGCATCAATTACCAATTGACATAGGCACAGTTAGTGAAATATCTGCACGGCGTGAAGATAGTGTGGTTTTCATTGGCTTTACAAGCTTTTTGACTCCTGGTATCATATATCAATACAACCTGAACACACAGATTCCTGATATGAAGATCTTTCGTGAGATTGTTGTCCCTGGGTTTGACCGCTCTGAGTTTCATGTCAATCAGGTTTTTGTGCCTAGTAAAGATGGTACCAAGATCCCCATGTTCATTGTTGCCAGAAAGGATATTATTTTGGATGGTTCACACCCTTGTTTATTATACGGATATGGCGGTTTTAACATCAGTCTTACACCATTTTTCAGTGTTAGCCGTATTGTCCTAGCGAAACATTTAGGTTCTGTTTTCTGCATAGCAAATATTCGAGGTGGTGGAGAATATGGAGAGGAATGGCATAAAGCAGGATCCCTTGCAAAAAAGCAAAATTGCTTTGATGACTTCATTTCTGCAGCTGAATACCTTGTATCTGCTGGTTATACCCAACCCAAAAAGTTATGCATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGCGCTTGCATTAATCAGAGACCTGATCTTTTTGGGTGTGCACTGGCTCATGTTGGTGTTATGGACATGTTGCGGTTCCACAAATTCACTATAGGTCATGCTTGGACGTCAGATTTTGGCTGTTCTGACAAAGAGGAAGAATTTCATTGGCTAATCAAGTACTCACCATTGCATAATGTCCGGAGACCATGGGAACAACATCCAGACAAGTCAATTCAGTACCCATCAACTATGCTATTGACAGCTGATCATGATGACCGTGTTGTGCCATTGCATTCATTGAAGCTTTTAGCGACCATGCAGCATGACCTTGTTACTAGCCTGGACAAAAGTCCCCAGACGAACCCAATAATTGCTCGAATTGAATGCAAAGCTGGACATGGAGCTGGACGTCCAACACAGAAAACGATTGATGAAGTTGCTGACCGGTATGGTTTTATGGCAAAGATGTTAGAGGCTCATTGGATTGAGTAG 2214 0.416 MGSLSAFHDEAIQYPIARRDHSVVDNYHGVNIPDPYRWLENPDAQQVKDFVQQQIVLTDSVLKTCDYFRTKLGDTIKKVFDHPRYSAPFKRGLNTYFYFHNTGLQPQSVLYVQDGLEGQPHVLLDPNLLSHDGTVSLNTFSVSKDATFFAYGLSSSGSDWLTIKVMSLHHNLLQPDTLSWVKFSSISWTHDTKGFFYTRYPAPTIKKDGELVDAGTETDANLYHELYYHFLGTDQSQDILCWRDPHNPKYMFGTSITDDGKYVLLSIEEGCDPVNKIYYFDLSKLPNGLKGFRNENSLLPFVKLIDNFDAKYQPIANDDTVFTFLTNKDAPKYKLVRVDLKEPNTWTDVIQESEKDVLESAYAVNGNQLIVSYLSDVKYVLQVRDLETGSLQHQLPIDIGTVSEISARREDSVVFIGFTSFLTPGIIYQYNLNTQIPDMKIFREIVVPGFDRSEFHVNQVFVPSKDGTKIPMFIVARKDIILDGSHPCLLYGYGGFNISLTPFFSVSRIVLAKHLGSVFCIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAAEYLVSAGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDFGCSDKEEEFHWLIKYSPLHNVRRPWEQHPDKSIQYPSTMLLTADHDDRVVPLHSLKLLATMQHDLVTSLDKSPQTNPIIARIECKAGHGAGRPTQKTIDEVADRYGFMAKMLEAHWIE 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00018 737 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 15 435 IPR023302 GO:0004252
Trre1g00018 737 SUPERFAMILY alpha/beta-Hydrolases 457 682 IPR029058 -
Trre1g00018 737 FunFam Prolyl endopeptidase 83 446 - -
Trre1g00018 737 Pfam Prolyl oligopeptidase family 504 732 IPR001375 GO:0006508|GO:0008236
Trre1g00018 737 PANTHER PROLYL ENDOPEPTIDASE 10 735 - -
Trre1g00018 737 Gene3D - 83 446 - -
Trre1g00018 737 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 654 676 IPR002470 GO:0004252|GO:0006508
Trre1g00018 737 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 572 592 IPR002470 GO:0004252|GO:0006508
Trre1g00018 737 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 487 505 IPR002470 GO:0004252|GO:0006508
Trre1g00018 737 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 542 561 IPR002470 GO:0004252|GO:0006508
Trre1g00018 737 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 514 538 IPR002470 GO:0004252|GO:0006508
Trre1g00018 737 ProSitePatterns Prolyl endopeptidase family serine active site. 549 579 IPR002471 GO:0004252|GO:0006508
Trre1g00018 737 SUPERFAMILY Peptidase/esterase 'gauge' domain 12 435 - -
Trre1g00018 737 Gene3D alpha/beta hydrolase 23 727 IPR029058 -
Trre1g00018 737 FunFam Prolyl endopeptidase 416 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00018 Trre-Chr1 194172 197692 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00018 K01322 - gmx:100812955 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00018 1 194172 197692 Trre1g00018 1 194172 197692 ECH
Trre1g00018 1 194172 197692 Trre5g05747 5 57398919 57402600 PCT