Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00016 ATGGAGGAAGTCGCAGGCGAGTTAGAAGAAGTTGTTAAGTCTCTTCCTTCCGACGCCGTCAACCACTTATTCTCCCTCGGGTTATGTGTGCGCTGCATCTTTCGTGTATTTGGCGTGGAAGTCACCACCGTCTATGCATCTTCTTCACTATCACCGTCCATATTCCCTTCCATTGCTATTGCTGCTGCTGCTCATCAAGATGATAAACTCTGCACCCTCTGCTTAGGTATCCTTCAGTTTAGATTTCACCGCACCAAAGACGATAACAACAACAACGATGTCCCTCTTCTCATTTCTCAAATGGTTAAACGTGAGGGCTATCACTGTGATTCCTTTTCCCTCGAAGTTTCCATTCCTCCTGTTATCCTTCACAACGATAACTATCTTCGCTCCTACATGAAAACCAAATATGGATCTCAACCTTGGTTTCAACAAACATGCATCTCTGCAAAGGATGCCTTGAAATTTTCTCTACTGCCTGCTCTTCAAAATCTCCTCCAATGTAAATCAAGTGTGGGTTCTTTACGCATTCGTTTGACATACACTGAGTCAAATGAGGCCGACAAATGCTCAGATAATGTTGACAGCTGTAAGAGAAGAAAAACAGATGAATGCAATTTAGTTGGACAAAAGTCTATCAGCAGTTCGCTAGAAAATGAATCCTCTGGTTGCTGTAAATTCTTGCTGGAAATGGCAAATGAACCTTGCCATTTTACTTACCTTTGCTACAGAACACCTTTATATTTTGGCGGAAGATACCTGAAGTATTCGCGGAATGTGAGTCAAACACGTTGGATCATTGATGATGAAAGAATGGGGGAAGCATCAGTTGAGGAAATAATTGGTGGAAACATCCTCCAAGTATGCCAAGCTGATAGTTTCAAGTTTCATGCTGCCGGAAGAGAAGATATTGATGTCCGAATGCTGGGCCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGCACGACAAGTCCCATCTGAAATGTTTGTTAAAGATATAGAGAAAAAGATAAATACCATGGAGAATAAATTGGTTAGAGTGAAAAATCTGAAACTTGTTGGCAGTCATGGCTGGGACCTTATGCGTGAAGGTGAAGCTGAGAAGCAGAAGCAATATGCTGCTTTAGTGTGGATTTCCCGTCCTCTGAAGGATGAAGATTTTCAACATGTGTCTTCAGTCAAGGATTTGAAAGTTTTGCAAAGGACACCAATCAGGGTGCTACACCGTCGCAGTCCTTTAGAGCGTGAAAAAATCATTCATTGGATGAAAATAGAGGCAATTGCTGGAAGTTCCCAATATTTTCTTTTGCATCTATGTACACAGGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGGCGCACGCATCCTAGCATTGGATCTATGTTCGGTTGTAGAGCTGAAATTTTGCAACTTGATGTGACGGACATCAAAATGGAATGTTTCCTGAATTAA 1464 0.4221 MEEVAGELEEVVKSLPSDAVNHLFSLGLCVRCIFRVFGVEVTTVYASSSLSPSIFPSIAIAAAAHQDDKLCTLCLGILQFRFHRTKDDNNNNDVPLLISQMVKREGYHCDSFSLEVSIPPVILHNDNYLRSYMKTKYGSQPWFQQTCISAKDALKFSLLPALQNLLQCKSSVGSLRIRLTYTESNEADKCSDNVDSCKRRKTDECNLVGQKSISSSLENESSGCCKFLLEMANEPCHFTYLCYRTPLYFGGRYLKYSRNVSQTRWIIDDERMGEASVEEIIGGNILQVCQADSFKFHAAGREDIDVRMLGPGRPFLVEVQNARQVPSEMFVKDIEKKINTMENKLVRVKNLKLVGSHGWDLMREGEAEKQKQYAALVWISRPLKDEDFQHVSSVKDLKVLQRTPIRVLHRRSPLEREKIIHWMKIEAIAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSIGSMFGCRAEILQLDVTDIKMECFLN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00016 487 SUPERFAMILY Pseudouridine synthase 367 481 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre1g00016 487 FunFam tRNA pseudouridine synthase Pus10 371 481 - -
Trre1g00016 487 Gene3D - 371 481 - -
Trre1g00016 487 PANTHER UNCHARACTERIZED 63 484 IPR039894 -
Trre1g00016 487 FunFam tRNA pseudouridine synthase Pus10 246 370 - -
Trre1g00016 487 Coils Coil 331 351 - -
Trre1g00016 487 Gene3D - 246 370 - -
Trre1g00016 487 NCBIfam tRNA pseudouridine(54/55) synthase Pus10 245 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00016 Trre-Chr1 187704 192415 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00016 K07583 - gmx:100780683 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00016 1 187704 192415 Trre1g00016 1 187704 192415 ECH