Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00015 ATGGAGGGATTGAATGTTAATCACTTAGTGGTGTTATTGTGTGTGTTGGCCGTTATCACTACTACTACTACTGTTGTTGCTGAAGATCCATACAGGTTCTTCAACTGGAACGTTACATACGGCGACATTTATCCACTTGGTGTTCGCCAACAGGGAATACTTATCAATGGCCAATTCCCAGGTCCTGACATTCATTCTGTTACAAATGACAATCTCATTATCAATGTCTTCAACAGCTTGGATGAGCCTTTTCTCATCTCCTGGAACGGAGTTCAGCAGAGAAGGAACTCATACGAAGATGGGGTGTTTGGAACAACATGTCCCATTCCCCCTGGAAAGAACTTCACATACATACTTCAAGTGAAAGATCAAATTGGTAGCTTCTACTATTTCCCATCCCTTGCATTCCACAAAGCTGCTGGTGGTTTCGGAGGCATTAGGATTCTAAGTAGGCCAAGAATTCCAGTTCCCTTTGATGATCCCGCTGGTGATTATACCGTCCTTATTGGAGATTGGTACCAGTCCAACCACACAGATTTGAAGGCTCAACTTGATAATGGTAAGAAGTTGCCTTTCCCCGATGGAATACTTATCAATGGTCGTGGATCTGGAGGTGCATCTTTCAATGTGGAGCAAGGAAAGACTTACAGGCTTAGAATATCAAATGTGGGATTGCAAAATTCACTGAACTTTCGCATACAAAACCACAAGTTAAAGCTGGTAGAAGTCGAAGGAACACACACCCTCCAAACCACCTACTCATCCCTTGATGTTCACGTGGGTCAATCATACTCAGTTCTAGTTACAGCAGATCAACCTGGTCAAGACTATTACATTGTTGTTTCCTCTCGATTTACCACTCCAGTACTCACCACCACCGGAATTCTTCGCTACAGCAACTCTGCCGGCCCAGTATCAGGACCACCCCCTGGTGGACCTACAATTCAAATTGACTGGTCTTTGAACCAAGCCCGCTCCATTAGGACAAACTTGACAGCAAGTGGACCGAGGCCAAACCCACAAGGATCATACCATTATGGCATGATAAACACAACCAGGACAATCGTACTTTCAAGTTCAGCTGGTCAAGTCAGTGGGAAGCAAAGATATGCAATTAACAGCGTGTCTTATGTTTCCCCCGACACTCCTCTTAAGCTGGCTGACTTCTTCCAGATATCAGGTGTTTACCGTCCTGGTAGCATCTCTGATAGACCCACTGGTGGTGGTATATACCCTGACACTTCTGTTCTACAAACTGACTACAGAACATTTGTAGAGATTGTTTTCCAAAATGATGAAGACATCCTTCAGAGCTATCATCTTGATGGCTACTCTTTCTTTGTTGTTGGTATGGATGGAGGACAGTGGACAAGTGATAGCAGGAACCAATACAATCTTAGAGATGCAGTTTCGCGTAGCACCACTCAGGTATATCCCAAGTCATGGACTGCTTTATATGTTGCGCTCGACAATGTGGGAATGTGGAACTTGAGGTCTGAATTTTGGGCACGACAATACCTTGGACAACAGTTTTATATGCGTGTGTACACAACATCAACCTCACTCAGAGATGAATACCCTATTCCTAAGAATGCACTACTTTGTGGTAGAGCAGCTGGAAGACATACTCGACCCCTTTAA 1641 0.4412 MEGLNVNHLVVLLCVLAVITTTTTVVAEDPYRFFNWNVTYGDIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLISWNGVQQRRNSYEDGVFGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFDDPAGDYTVLIGDWYQSNHTDLKAQLDNGKKLPFPDGILINGRGSGGASFNVEQGKTYRLRISNVGLQNSLNFRIQNHKLKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPGQDYYIVVSSRFTTPVLTTTGILRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINTTRTIVLSSSAGQVSGKQRYAINSVSYVSPDTPLKLADFFQISGVYRPGSISDRPTGGGIYPDTSVLQTDYRTFVEIVFQNDEDILQSYHLDGYSFFVVGMDGGQWTSDSRNQYNLRDAVSRSTTQVYPKSWTALYVALDNVGMWNLRSEFWARQYLGQQFYMRVYTTSTSLRDEYPIPKNALLCGRAAGRHTRPL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00015 546 SUPERFAMILY Cupredoxins 348 537 IPR008972 -
Trre1g00015 546 SUPERFAMILY Cupredoxins 158 338 IPR008972 -
Trre1g00015 546 CDD CuRO_1_AAO_like_1 33 148 IPR034273 GO:0005507
Trre1g00015 546 FunFam Monocopper oxidase-like protein 162 336 - -
Trre1g00015 546 Gene3D - 161 336 IPR008972 -
Trre1g00015 546 Gene3D - 31 152 IPR008972 -
Trre1g00015 546 FunFam Monocopper oxidase-like protein 348 545 - -
Trre1g00015 546 SUPERFAMILY Cupredoxins 23 178 IPR008972 -
Trre1g00015 546 Pfam Multicopper oxidase 164 300 IPR001117 -
Trre1g00015 546 Pfam Multicopper oxidase 382 518 IPR011706 GO:0005507|GO:0016491
Trre1g00015 546 FunFam L-ascorbate oxidase homolog 31 152 - -
Trre1g00015 546 Pfam Multicopper oxidase 38 151 IPR011707 GO:0005507
Trre1g00015 546 Gene3D - 347 542 IPR008972 -
Trre1g00015 546 PANTHER MULTI-COPPER OXIDASE 50 514 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00015 Trre-Chr1 181878 184869 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00015 - - gmx:100812416 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00015 1 181878 184869 Trre1g00015 1 181878 184869 ECH
Trre1g00015 1 181878 184869 Trre5g05754 5 57427619 57433775 PCT