Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00013 ATGGCGCATCAATCTTCTTCTTCTTCTTCTTCAAATGAAGGCGGCCCCAGTACCCTCAATGTTTCACCAGAAGACTCTTCAGATTCAACTGTTCACCTCAATATCAAGACTCTTGATTCCCGAATCTACACTTTTCAAGTTCACAAAAATATGCCCGTTTCGCTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGACTAATATTTAGAGGAAAAGTCTTAAAGGATGAACATGTTCTTTCCGAGTATCATGTTGAGAATGGGCATACGTTGCATTTAGTTGAAAGACAGCCAAGTCAGTCACAGACTCCTGGTACAGGGTCCGGTGAGACAACCAGCACAACCGGTAACCGAGGAAACGATGTTGGATCAGGAGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTGGTTCTTGGGACTTTTAATGTGGGGGAACAGGGTGAAGGCATTTCTCAAGACCTTACTCGGGTTATTGGGGCAGTTTTGAATTCTTTTGCGAATGGGGGCCAGAGCACAATTAATGTTCCTAATTCCGCACAAAATTCTTCGGCTCCACCGGGGAATGAAACTGAAGGAAATCAAGCTGGAAATCAAAGCCTAGCCGGAAATCTGGCGCCATCTGGACAGGCATTTCCTGGTCAAGCATTCCAATCACTGCCTCATGTTGTTCAGATTCCTATGGCTGCAGGAGCTATACCTGTTCCTTCTTTCAATGCACCAATTCCTCATTCACTGAGTACGCTGTCTGAGTTCATAAATCGCATGGAACATGCACTTTCACGAAATGGTTATGGGCCAAATGTATCTTCAACTAACCTTGGAGATCAACGAGTGGAATTGCCTTCCAATACACAAGGGTTGCCGACACTTGAAGCACTGACCACTGTATTGCATCGTGCAGAACAGTTGCTTAGTGGTCAAGCTGTTTCTGCGCTATCTCACATTGCAGGGCGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTATAAGAGGTCAAATACAGTCAGAGTCAGCACAGATAGGAATTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTGGGCCGAACTATGTTAACACTGCGAATGGGACGGTCTTCTGCAGAATCGGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCCATCAGGGCCGAATCCTATAATGGTGCAGCCATTTCCACTTCAGACAAGTTCCCTCTTTGGCGGCCCACTTTCTTCTTCAACTCCTGCAACTTTAGGCACTGTTGGTGTTGGAAGTGCTCCTAGGAACGTAAACATTCACATACACGCTGCTGGTGCCTCTCTTGCACCAATTGTTTCAGCTATCGGCTCTAGACCAAATAACGGGGAAGGGACGAGGACTGAACACCGTGGTGATCCTGGTTCTGGGGATTCAGGTTCGACACGGGTTTTACCTGTTAGAAATGTTATATCAGCAACTCTCCCATCCAACCCTTCTGGCATCGGAGCTGCTGGTAGCACACCAACTGGATTTAGTATTTCTACTTCACAGCTACCACCTGATTCAGCTCCATTATCATCTGTTTTAGCGGAAATCCATTCTCGCCTTAGAAACTCTGTTGGCAATATGCAAGGAGATAGCACAGTTCTGTCAGGCCAAATGCAATCAGCTACCAGGGACTTGTCTTCTGGATCTGAACCAAGACCCGCACATGTAAATGAACAGAGAGATACTGTGGAGACAAATGGATGTGGGGATGCCGGTGCATCCTCAGTTGGTTGCACTTCTGAGAGTGTTGTAGAGAAGCCCCAAACTGAGGCAATCAAAACCTGTAGTAATGATGGGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCGTCCAAACAAGATTTACAAAGTTCTTCTAGTGGAGAAACAACGGTAAAATCAGAGAAAGTGCAGGATGCTCCATCTGTCAGTGAAAGACGAGATGTAACTGAACCTGCCAAAACTGCTCCTCTTGGTCTAGGTGCGAGTGGTTTGGAGCGTAAGAAACGAACCAGACTTCAACCTCCACCTCCTGTTGGTAAAGCTGCTGATGACGGATCCTCCAGCTCTTCCATCAATCGAAGTCAGGAAACAAGGGCAGATAGTCAAAATATATTGCAAACACTCGCGAGTCAAGGATCTGCTGTTAATTTGATAAATGCTGACAGGCCATCATCTCAGCAGCCCATACCCTCCGGTGGTAGTCAGATTGATGTGGCGGGTTTAATGTCTCAGGTTCTACATAGTCCTGCTCTGAATGGTTTACTGGAAGGGTTTTCACAGCAAACAGGAGTTGACTCACCTGATGGCTTAAGGAACATGTTGCAACAGTTCACTCAAAGCCCACAGATGATGAACACGGTCAATCAGATTGCCCAGCATGTTGGCAGTCAGGATATGGGGAACATGTTAACTGGAACGGGAAGAGGGCAGGGTGGTGGCCTTAATTTTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGAGGGGGAAATCCTCCATCCTTATTCTCTGCCGCAGAACCAGAAACCCGTGCACCCTACAGGAATGAAAATTCCGATAATCGAAGTTTAGAGCTTGATCTTCAACCAGTGGTAGAGAGGATTGATCGCCCAAGTCCACCTACAGATGTCTTCCGCGCTGTAGCTGAAAATGCTGTACAGCTGTCTGGCAGTGGAAGTGCTTCTGATGATCTTCTGGATGAGTTATGTTGCAATGAAAGTCTTGCCAGTGAATATGTGGAGATGCTGCGATATGATGTAAATCAGCTGCTTGAAGGACGTTCGAAGAGGGACAAGTCCTAA 2838 0.4619 MAHQSSSSSSSNEGGPSTLNVSPEDSSDSTVHLNIKTLDSRIYTFQVHKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPSQSQTPGTGSGETTSTTGNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGISQDLTRVIGAVLNSFANGGQSTINVPNSAQNSSAPPGNETEGNQAGNQSLAGNLAPSGQAFPGQAFQSLPHVVQIPMAAGAIPVPSFNAPIPHSLSTLSEFINRMEHALSRNGYGPNVSSTNLGDQRVELPSNTQGLPTLEALTTVLHRAEQLLSGQAVSALSHIAGRMEREGTSADLGIRGQIQSESAQIGIAMQHLGALLLELGRTMLTLRMGRSSAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPLSSSTPATLGTVGVGSAPRNVNIHIHAAGASLAPIVSAIGSRPNNGEGTRTEHRGDPGSGDSGSTRVLPVRNVISATLPSNPSGIGAAGSTPTGFSISTSQLPPDSAPLSSVLAEIHSRLRNSVGNMQGDSTVLSGQMQSATRDLSSGSEPRPAHVNEQRDTVETNGCGDAGASSVGCTSESVVEKPQTEAIKTCSNDGRDVLVDKFVSSSSKQDLQSSSSGETTVKSEKVQDAPSVSERRDVTEPAKTAPLGLGASGLERKKRTRLQPPPPVGKAADDGSSSSSINRSQETRADSQNILQTLASQGSAVNLINADRPSSQQPIPSGGSQIDVAGLMSQVLHSPALNGLLEGFSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIAQHVGSQDMGNMLTGTGRGQGGGLNFSRMFQQMMPIVSQALGGGNPPSLFSAAEPETRAPYRNENSDNRSLELDLQPVVERIDRPSPPTDVFRAVAENAVQLSGSGSASDDLLDELCCNESLASEYVEMLRYDVNQLLEGRSKRDKS 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00013 945 SUPERFAMILY Ubiquitin-like 24 105 IPR029071 -
Trre1g00013 945 Gene3D - 20 115 - -
Trre1g00013 945 MobiDBLite consensus disorder prediction 180 217 - -
Trre1g00013 945 FunFam Large proline-rich protein BAG6 23 116 - -
Trre1g00013 945 MobiDBLite consensus disorder prediction 452 479 - -
Trre1g00013 945 PRINTS Ubiquitin signature 62 82 IPR019956 -
Trre1g00013 945 PRINTS Ubiquitin signature 83 104 IPR019956 -
Trre1g00013 945 PRINTS Ubiquitin signature 41 61 IPR019956 -
Trre1g00013 945 ProSiteProfiles Ubiquitin domain profile. 31 106 IPR000626 GO:0005515
Trre1g00013 945 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g00013 945 MobiDBLite consensus disorder prediction 99 128 - -
Trre1g00013 945 SMART ubq_7 31 102 IPR000626 GO:0005515
Trre1g00013 945 MobiDBLite consensus disorder prediction 622 645 - -
Trre1g00013 945 MobiDBLite consensus disorder prediction 573 605 - -
Trre1g00013 945 CDD Ubl_ubiquitin_like 33 100 - -
Trre1g00013 945 MobiDBLite consensus disorder prediction 550 605 - -
Trre1g00013 945 MobiDBLite consensus disorder prediction 622 707 - -
Trre1g00013 945 MobiDBLite consensus disorder prediction 691 707 - -
Trre1g00013 945 MobiDBLite consensus disorder prediction 98 136 - -
Trre1g00013 945 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 23 944 - -
Trre1g00013 945 Pfam Ubiquitin family 33 103 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00013 Trre-Chr1 169843 178957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00013 35 102 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.176 2.27e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00013 - - mtr:25482215 1362.05