Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00004 ATGGAGCTCGAGAATAGTAGAAGAATTATCGACCCAAGAAGTGGGTTCTGCAGCTCCAATTCAATCTTCTACAGTAAGAGGAAACCCCTTCCCCTCCCTCCAAACCACTCCTTAGACGCCACCACTTTCATCTCCTCTCGTCCCCATCATGGCCGCATCGCCTTCATCGACGCCTCCACCGGCCGTCAATTCACCTACCAACAACTATGGCGAGCCGTAGACGCAGTCAGCTCCTCTCTCTCCACCATGGGAATCAGTAAGGGTGATGTCATCCTCCTCCTCTCTCCCAACTCCATATACTTCCCTGTGGTGTGTCTCTCCGTCATCTCCCTCGGCGCCATCATCACCACCACCAATCCCCTCAACACAACACGCGAAATCTCAAAGCAGATTGCGGATTCCAAACCCGTCCTGGCCTTCACAACCCCTCCACTGGTTTCAAAAATCACCGGAGCATCGCCTTCACTCCCAATTATTCTCATGGAGACCGACGGGCACTCATCAAATACACTGGAGGAAATGATGAAGAAAGAACCCGCTTTGAGTAGGGTGAGGGAGCGAGTCAACCAGGACGACACTGCTACTCTACTTTACTCATCTGGAACGACCGGACCCAGCAAAGGAGTAATATCTTCGCAAAGGAACCTCATAGCGATGGTACAAATCGTATTGGGTAGATTCAGTAGGAAGGAAGAAGATGAGCGGATACAAACATTCATATGCACGGTTCCAATGTTTCATATATACGGTCTTGCTGTGTTTGCTTTGGGGGTTCTCGCTTTGGGTTCAACCACAGTTGTTCTATCCAAGTTCGAGATCCACGATATGCTTTTATCCATTGAGAAATTCAAAGCATCGTACCTGCCGCTTGTGCCGCCCATACTGGTGGCTATGCTGAACAACGCGGATGCGATTAAGAGCAAGTACGATTTGAGTTCCCTTCAGGCAGTGCTCTGCGGAGGAGCTCCTCTGAGCAAAGAGGTTACGGAAGGGTTTGTTGACAAGTACCCAAACGTTACTATATTTCAGGGTTATGGTCTGACGGAATCCTCTGGAGTCGGGAGTTCCACTGAATCTTTGGAAGAGACTCGTAAGTACGGCACGGCTGGGCTTGTTTCTGCTTCCACGGAGGCTATGATTGTTGACACTGAAACTGCTCAACCATTACCGGTTAATCGGAACGGTGAGCTTTGGCTCCGGGGTCCCACCATCATGAAAGGTTATTTCAGTAACGAAGAGGCAACTACATCAACCCTTACTTCAGAGGGTTGGTTAAAAACAGGGGATATTTGCTATATTGATACAGATGGATTCTTATTTGTCGTGGATCGCTTGAAAGAGCTCATTAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTTGAGGCTTTGTTGCTGACTCATCCTTCTATTTTAGATGCTGCAGTCATACCGTATCCTGATAAGGAGGCAGGGCAATATCCAATGGCATATGTAGTAAGGAAGACCGGAAGTAGTCTATCAGAAACTCAAGTTATGGATTTTGTTGCAGAGCAGGTGGCTCCATACAAAAGAATTCGAAAAGTGGCATTCATATCTTCCATACCTAAAAATCCGTCTGGTAAAATTCTTCGAAAAGATCTCATCAAACTCGCTACGTGTAAGCTTTGA 1650 0.4758 MELENSRRIIDPRSGFCSSNSIFYSKRKPLPLPPNHSLDATTFISSRPHHGRIAFIDASTGRQFTYQQLWRAVDAVSSSLSTMGISKGDVILLLSPNSIYFPVVCLSVISLGAIITTTNPLNTTREISKQIADSKPVLAFTTPPLVSKITGASPSLPIILMETDGHSSNTLEEMMKKEPALSRVRERVNQDDTATLLYSSGTTGPSKGVISSQRNLIAMVQIVLGRFSRKEEDERIQTFICTVPMFHIYGLAVFALGVLALGSTTVVLSKFEIHDMLLSIEKFKASYLPLVPPILVAMLNNADAIKSKYDLSSLQAVLCGGAPLSKEVTEGFVDKYPNVTIFQGYGLTESSGVGSSTESLEETRKYGTAGLVSASTEAMIVDTETAQPLPVNRNGELWLRGPTIMKGYFSNEEATTSTLTSEGWLKTGDICYIDTDGFLFVVDRLKELIKYKGYQVPPAELEALLLTHPSILDAAVIPYPDKEAGQYPMAYVVRKTGSSLSETQVMDFVAEQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATCKL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00004 549 Pfam AMP-binding enzyme 48 451 IPR000873 -
Trre1g00004 549 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Trre1g00004 549 CDD 4CL 32 541 - -
Trre1g00004 549 FunFam Long-chain-fatty-acid--CoA ligase FadD 24 446 - -
Trre1g00004 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 543 - -
Trre1g00004 549 Gene3D - 447 547 IPR045851 -
Trre1g00004 549 SUPERFAMILY Acetyl-CoA synthetase-like 47 545 - -
Trre1g00004 549 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Trre1g00004 549 Gene3D - 20 446 IPR042099 -
Trre1g00004 549 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00004 Trre-Chr1 94547 97932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00004 9 549 Monolignol Biosynthesis Gene Families AT1G20500 65.273 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00004 K10526 - gmx:100811344 844.728