Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05545 ATGGATGAGGAGAGGGACGTGGAGCAGATGATACCAAAATCAATATCATCATCATCATCATCATCGTCTACGGCTGGATCAGCCAGATCTGGCCTTATAGAGCCTCTGCTTGTCAATAACAACAGACTCAATACTACTTCCCAACTTGCCATTGTTGGAGCCAAAGTTTGTCCGATTGAAAGTCTCGACTACGAGATCATTGAGAATGATTTATTCAACCAAGACTGGAGGTCTAGAGGAAAGACTGAGAAAGCGCAGTATATGATTCTGAAATGGACCATTGTACTTCTTATTGGTTTAGGCACAGGCCTTGTTGCCTTCTTCAACAACATTGGAGTTGAGAATATTGCCGGTTTCAAGCTTCTCCTCACCAACGATCTCATGCTTAACCACAAGTATTATAAGGCCTTTGCAGTCTATGCTAGTTGTAATATGGTTTTAGCCATTGCTGCAGCATCCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGATCCGGCATACCTGAGGTCAAGTCATATCTCAACGGTGTAGACGCTCCTTCTATATTGGCTCCAACCACCCTCTTTGTAAAGATTTTTGGTTCAATTTTTGGAGTTGCAGCCGGTTTTGTTGTGGGTAAGGAAGGACCTATGGTGCATACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTGAAAAATATGGACTAACCTGGAAAGGATTCAGATATTTTAAAAATGACAGAGATCGAAGGGATTTTATCACATGTGGTGCGGCTGCTGGTGTTGCTGGTGCCTTTCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCGGCTTCTTGGTGGAGGAGTGCTCTTCTGTGGCGAACATTTTTCACTACAGCTGTAGTAGCTGTAGTGTTGAGAGGTTTCATGGAATATTGCAAAGGTGAAAACTGTGGTCTTTTTGGGGAAGGAGGTTTGATCATGTTTGATGTCAATTCAGTAAAGCCTGCATACAGCATACCAGACTTACTGGTAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTGGGAAGCCTTTATAATTATCTCGTGGATAAGGTCCTTCGCACTTACAGCATCATTAATGAGAAAGGTCCTATATTTAAAATAATACTTGTGATGATTATATCGTTTTTGACCTCTTGTTGTTCATTTGGGGTTCCATGGCTATCAAAGTGCATCCCTTGTCCTTCTCATGTGGGGGATCAGTGCCCAACCGTAGGGCGCTCTGGACACTACAAGAATTTCCAGTGTCCTCCTAATCACTACAATGACCTCGCCTCTCTCTTTTTTACTACCAATGATGATGCTATCCGCAACCTCTTTATTGCTGGCTCTGACAAAAGATTCCTGCTCTCCAGTCTCCTGATATTTTTTGTGGCAATCTACTTCCTCGGAATCATCACTTACGGCATAGCAATTCCGTCGGGGCTCTTTATTCCGGTGATACTTGCAGGGGCCTCATATGGCCGTGTTGCAGGAAGTTTGTTAAGTCCATTCACAGTTTTGGATGTGGGCTTGTTTGCACTCTTGGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACTGTTTCTCTTTGTGTTATACTTCTTGAACTCACTAACAACCTCCTCATGCTACCATTGGTCATGTTGGTTCTCCTTATCTCAAAGTCGGTGGCCGATTGTTTTAACAAAGGTGTTTATGATCAGATAGTGGAAATGAAGGGGTTGCCTTATTTGGAAGCGCACGCAGAACCGTACATGAGGCAGTTAGTTGCGGGTGATGTTGTTTCTTGTCCGTTGTTTACATTCTCTAAGATTGAAAAAGTGGGGAATATTGTGCACACTTTAAAGGTGACACGACATAATGGGTTCCCTGTAATTGATGAGCCTCCATTATCAGATGCACCAGAGTTGTGTGGGTTGGTTTTGAGGTCACATTTGCTTGTAATTCTTAAACACAAGGCATTTACGACGATGCAAGAGGGGATTCCCTTGGTTATGAATAAGTTGAGGCCACATGATTTTGGAAAGCCAGGTTCGGGGAAGGGGATAAGGCTGGATGATTTAAAGATATCAGAGGAGGAGATGGAAATGTATGTTGATCTGCATCCTATTACCAACAGGTCACCATATACAATTATGGAGACATTGTCTCTGGCTAAAACAGCTGTTCTTTTCCGCGAGCTTGGCCTTAGGCACTTGTTGGTCCTCCCAAAGACACCCGGAAGGCTTCCCATTGTGGGGATCATGACTAGGCACGACTTCATGCCCGAACATATATTGGGACTATACCCTCATTGCAATCCCTACAAGTAA 2322 0.4393 MDEERDVEQMIPKSISSSSSSSSTAGSARSGLIEPLLVNNNRLNTTSQLAIVGAKVCPIESLDYEIIENDLFNQDWRSRGKTEKAQYMILKWTIVLLIGLGTGLVAFFNNIGVENIAGFKLLLTNDLMLNHKYYKAFAVYASCNMVLAIAAASLCAYIAPAAAGSGIPEVKSYLNGVDAPSILAPTTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSEKYGLTWKGFRYFKNDRDRRDFITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEYCKGENCGLFGEGGLIMFDVNSVKPAYSIPDLLVVIFLGVIGGLLGSLYNYLVDKVLRTYSIINEKGPIFKIILVMIISFLTSCCSFGVPWLSKCIPCPSHVGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEAHAEPYMRQLVAGDVVSCPLFTFSKIEKVGNIVHTLKVTRHNGFPVIDEPPLSDAPELCGLVLRSHLLVILKHKAFTTMQEGIPLVMNKLRPHDFGKPGSGKGIRLDDLKISEEEMEMYVDLHPITNRSPYTIMETLSLAKTAVLFRELGLRHLLVLPKTPGRLPIVGIMTRHDFMPEHILGLYPHCNPYK 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05545 773 CDD ClC_6_like 60 581 - -
Trre16g05545 773 CDD CBS_pair_voltage-gated_CLC_euk_bac 584 760 - -
Trre16g05545 773 MobiDBLite consensus disorder prediction 11 27 - -
Trre16g05545 773 PRINTS Chloride channel signature 480 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g05545 773 PRINTS Chloride channel signature 530 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g05545 773 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g05545 773 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g05545 773 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g05545 773 PRINTS Chloride channel signature 568 582 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g05545 773 PRINTS Chloride channel signature 512 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g05545 773 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g05545 773 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g05545 773 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g05545 773 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g05545 773 PRINTS Plant CLC chloride channel signature 432 448 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g05545 773 MobiDBLite consensus disorder prediction 1 27 - -
Trre16g05545 773 Pfam Voltage gated chloride channel 149 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g05545 773 Gene3D Clc chloride channel 83 582 - -
Trre16g05545 773 SUPERFAMILY CBS-domain pair 585 758 IPR046342 -
Trre16g05545 773 SUPERFAMILY Clc chloride channel 69 584 IPR014743 -
Trre16g05545 773 FunFam Chloride channel ClC3 83 398 - -
Trre16g05545 773 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 37 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05545 Trre-Chr16 57914950 57918617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05545 31 773 Ion Channels AT5G49890 75.168 0.0 1111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05545 K05016 - jre:108988922 1135.55