Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05532 ATGGAACTTTCTAGCACCCAAGATGGGGAAATCCCAATCCCCATAAATAATTATGGCGGTGCTGGTTCCAATGGACATGCTCATCACATGCTTCATAACCATCATCATAATCATGTTCATGATCACCCTACTCCTCATCCTCCTCCACTACACCATAACCATAATCACTGTAATATAATTATATCATCTTCCTCAACTGCAGCAGCAGCAGCAGTACCGGTGGCAGTAGTACCCCAAAACCCTTCAATTAATGGAACTACCACCACCACCACCACCTCTATGCAAGCTGTGAGCGGTGTGGAATTAGAACATGATCACTCCTCCTACAAGAAATCATCATCAGTGGTGGTGAGGTACAGAGAATGTCTTAAAAACCATGCAGCTGCAATGGGAGGGAATGCCACAGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAACAAGGTACCATTGAGGCACTCAACTGCTCTGCCTGTCATTGCCACAGAAACTTCCACAGAAAAGAAGTTGAAGGTGAAACTGATCAGGAAGACAGCTACCACCACCATCATAACTCCTCCTCTGCCTTCAATTTCAACCTCAACAGGCAGCAGCAACACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCTTGGTTACCATCACCACCACCCTACTCCTAATACTGCATCAGCAGCAACTGGTAACAACATTCTTCCTTCTAGAGCTGTGCCACCACCCCCACATGGACATGGCCACATCATTATGCCATTCAACTACAACATACCTTCTGAATCTGATGAACAAGAAGATTATCAGGCAGCTGCTAGACCACCTACTCAGCAGCAGCAGCAACAACAGATGGTGATGAAGAAAAGGTTCAGAACAAAGTTCACACAGGAGCAGAAAGACAAAATGTTCAACTTTGCTGAGAAAGTTGGGTGGAAATTTCAGAAGCAGGAGGAATCTCTGGTGCAACAGTTCTGCCAAGAGATTGGAGTCAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAACAATTACAAGATGAACTTACTACTGCTAATCATCTCCCAACTCCTTAA 1086 0.4457 MELSSTQDGEIPIPINNYGGAGSNGHAHHMLHNHHHNHVHDHPTPHPPPLHHNHNHCNIIISSSSTAAAAAVPVAVVPQNPSINGTTTTTTTSMQAVSGVELEHDHSSYKKSSSVVVRYRECLKNHAAAMGGNATDGCGEFMPSGEQGTIEALNCSACHCHRNFHRKEVEGETDQEDSYHHHHNSSSAFNFNLNRQQQHSMRKFMLPLPDLGYHHHHPTPNTASAATGNNILPSRAVPPPPHGHGHIIMPFNYNIPSESDEQEDYQAAARPPTQQQQQQQMVMKKRFRTKFTQEQKDKMFNFAEKVGWKFQKQEESLVQQFCQEIGVKRRVLKVWMHNNKHNLAKKQLQDELTTANHLPTP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05532 361 Gene3D - 270 346 - -
Trre16g05532 361 MobiDBLite consensus disorder prediction 256 276 - -
Trre16g05532 361 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 118 169 IPR006456 -
Trre16g05532 361 NCBIfam homeobox domain, ZF-HD class 284 340 IPR006455 -
Trre16g05532 361 FunFam Zinc-finger homeodomain protein 2 272 345 - -
Trre16g05532 361 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 119 168 IPR006456 -
Trre16g05532 361 SUPERFAMILY Homeodomain-like 277 345 IPR009057 -
Trre16g05532 361 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 93 343 - -
Trre16g05532 361 Pfam ZF-HD protein dimerisation region 117 169 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05532 Trre-Chr16 57776730 57777815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05532 107 346 ZF-HD Transcription Factor Family AT2G02540 46.185 6.32e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre16g05532 ZF-HD_dimer 3.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05532 - - tpra:123910799 496.893