Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05524 ATGAATGATCCAAGCAGCCTCCACTTGAAGAAGGAACTCACTCAAATTCGAAAGGCTTCTCGCGTCTTGAGGGATCCCGGCACTACTTCTTCCTGGAAATCCACAACCTCCAGATCTGCTGCTCCATTCAGGAATCATCATCATCATCATCTTCCTTCTCCTTCTGCGAATAGCAACAACAGAAGAGTCTTCTTATACAACTGGAACAACTGCAAATCATCATCACCATCCTTCAGCCACCATCAACAACAACTTGAAGAGGACGACCACTCTTCTTCCTCCCTTCTTGCAAGTTTAGAAGAACACGGTTTCAGCGACGCTCCCAACGTTCTTGATTCAAAGAGTGACGCTGGGACCCGCTCTTCCTTTTTCCCTAATTCAACTATTCCACTTCATCATCTTAATAATAATAAGAATAAAAAAAAGAACAAGCCATTGCTCCTACCACGCCATTCAAACTCCGACCAGGACGATGATTATTCTAACTCCGTTTCCGGTGCTTCTTCTCTTCTTCTCAAACTCAAAAACCACAACAATTCCTCCAACTTCATCACAACAACAAGAAGAACAAGAAGAAGAACCTCCAAAGACGATGATTCTTCTTATACCTATAGTACCCCTGCATTGTCGGCCACCTCTTTCAACAGGTACCGTCGCCGTTATCCCAGCACCGTTGGATCCTTTGACGGCACAACTACCTCCATGAATGACGGTGATGACGAGATTGACGACGATCACTTGGATCTGCCTGGTCGTCAAGGATGTGGGATTCCTTGTTATTGGTCTAAGAGAACGCCCAGAAATAGAGTTGCAGGCTGTGGTAGTTGTTGTTCTCCTTCCCTCTCTGACACTTTGAGAAGGAAAGGTACCACCATTCTCTGTGGAACTCAATCTATGTATTCCAGACACTGCAGATCCTCTTCTTCCACTTCACTTCCTCACAAGCGGAGAATGTCTTTGAGGAATGCTCGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGTGGTGTTGTTCCTCTCCTCACTAGCACTAGCAGCGGTGATGTTAGACAAGGCTCCTCCTCTATTGGAATTGGTAGGAGCAGGACCGATGATGAACTTTCTACTAACTTTGGTGAACTTGATCTTGAGGGATTGAGCAGACTTGACGGAAGAAGGTGGTCTTCCAGTTGTAGGAGTCAAGAGGGTTTGGAGATTGTCCCTCTCAATGAGGATGAAGAAGGCTCCTCCGATAACGGTAGGAGTTTCAGCCATAAATATAAGCCTTTGTTCTTTGGTGAACTCATTGGTCAGAATATTGTGGTTCACTCCCTAGTCAATGCTATTTCCAGGGGCAGAATTGCTCCTGTCTATCTTTTTCAAGGTCCCCGTGGGACTGGCAAAACATCTACTGCTAGGATATTCGCCGCTGCCTTGAACTGTGTGGCTTCCGATGAAGGTAAGCCTTGTGGATACTGCAGGGAGTGTGCTGATTACGTTTCTGGCAAGAGCCTTGATCTGGTGGAAATTGATGGAACTAGTAAGAAAGGAATTGATAAAGCTAGATATCTTTTGAAAAGATTGTCGGTTGTGCCTTCTGCGGCGGCATCCTCGCGATATACTGTTTTTGTTATTGACGAGTGTCACTTGTTAACTTCCAAGACATGGCTGGGATTTCTCAAGTTTCTCGAAGAACCGCCCCAGCGAGTTGTATTCATATTTATAACATCCGATCTTGACAATGTGCCACGAACAATACAGTCTCGATGTCAGAAGTATCTTTTCCATAAAATTAAAGATGGGGATATTGTGACCAGGTTAAGGAAAATATGTACTCAGGAGAGCCTAGACGTGGAAACAGATGCACTGGACCTTATTGCTATGAATGCAGACGGTTCACTTCGGGATGCAGAGACAATGTTAGAGCAGCTTAGTTTGCTGGGGAAAGGAATCACTACATCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAACTATTGGAACTTTTGGAGTTAGCAATGTCAGCAGACACTGCAGAGACGGTGAAAAGGTCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGGCTTATTATGGACATCATTGCCGGATCATATGCAGTGGTTGATACCAAATCTGACGGTTCATTCGTCGGTGGTCGGAGTTTGAATGAAACGGAGCTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACGTGGTTTACAGCAACTCTTTTACAGCTTGGTTCCGTACCTTCTTCAGATCATACTCAGTCAAGCAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGGTTCAAGAGACATTTCTTCTTTCAAGCACAAATCAGACATCCAATATATGTCTCAAAAGTCAACACCCACTGCTTCCCACCTAAAAGCAGTAAATGACAGTTCCAGCCTTCAAATGGATATGCTCTCAAAAATTGATGGTTTCAGCTTGAAATCAAAGCCGTCAAATAGCCCGGTTATAGATGATGGCTCTACAGTGGTCTCATCGGATGATCTTATTGTCGGGAATACAATGTTTAGATGCATAGATTCAGGGAAGTTATGTGACATATGGGCATGCTGTATTGAGAGGTGCCACTCTAAGACATTAAGGCAGCTGCTACACGATCACGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGGGACGAAGATGTTAAACTTAGGGTTGATAGGTTTTTAAGTAGCATTACAAACTCCTTGGAAATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCAGATGGTGAAGGTGAAAAACAGGTTAATCTGCCGGGTCTAAAGCAAAGTGCATCAACATTGGCAAGTGAGGACGAACAAAGACGAGGTCATATGAATGGAACTGTGTCATATTCAAGTTTGCCTCAATCTGCCATGGGTTCATCAGATATTCTGACCCAAGGAAACGGCGTTAAGGAAAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAGGCTGTAGAAAAAGGTTCCCCTGGATCACTGAGTCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCTCAAGATGGTGTCTATTGTGTAAACCCTATGGAGTCCATGGATTCAACAAGATATTCCTCTCATCAGCATCTGGAAGATGATACAAATGGTGATCTTAAAATTTTGAGCCTTAAAAATGGGAGGGTCCTACAGAAGGATCAGAGTAGTAAAAGAGCCGACGGTTATCCCATGTCCCCAAGTATATTGCATGACAGCAGTTTAGCAATAATGTCTGGAAAAGATAACCTGGGTTATGAATCGGGTTCGGGAGCTGGAGGTTGTGGGTTTTTATGTTGGAATAAAAAGTCCAAGACCAGAAGGGCAGTGAAGATAAAAGGTACCCCAGTTGGAGGATCCCGTAAGGTTGGGCGTTCTACATTGTTTGGTGAGTGTGGTAAGAGGAGGAAAAAGGAGGGTAAAAGATAA 3597 0.444 MNDPSSLHLKKELTQIRKASRVLRDPGTTSSWKSTTSRSAAPFRNHHHHHLPSPSANSNNRRVFLYNWNNCKSSSPSFSHHQQQLEEDDHSSSSLLASLEEHGFSDAPNVLDSKSDAGTRSSFFPNSTIPLHHLNNNKNKKKNKPLLLPRHSNSDQDDDYSNSVSGASSLLLKLKNHNNSSNFITTTRRTRRRTSKDDDSSYTYSTPALSATSFNRYRRRYPSTVGSFDGTTTSMNDGDDEIDDDHLDLPGRQGCGIPCYWSKRTPRNRVAGCGSCCSPSLSDTLRRKGTTILCGTQSMYSRHCRSSSSTSLPHKRRMSLRNARRGGGGGGGGEGGVVPLLTSTSSGDVRQGSSSIGIGRSRTDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLNEDEEGSSDNGRSFSHKYKPLFFGELIGQNIVVHSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDEGKPCGYCRECADYVSGKSLDLVEIDGTSKKGIDKARYLLKRLSVVPSAAASSRYTVFVIDECHLLTSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFHKIKDGDIVTRLRKICTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKGITTSLVNELVGVVSDEKLLELLELAMSADTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKSDGSFVGGRSLNETELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDHTQSSSSRRQSCKTTEDDPSSGSRDISSFKHKSDIQYMSQKSTPTASHLKAVNDSSSLQMDMLSKIDGFSLKSKPSNSPVIDDGSTVVSSDDLIVGNTMFRCIDSGKLCDIWACCIERCHSKTLRQLLHDHGKLVSISEVQGVLVAYVAFGDEDVKLRVDRFLSSITNSLEIVLRRIVEVRIILLPDGEGEKQVNLPGLKQSASTLASEDEQRRGHMNGTVSYSSLPQSAMGSSDILTQGNGVKERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGVYCVNPMESMDSTRYSSHQHLEDDTNGDLKILSLKNGRVLQKDQSSKRADGYPMSPSILHDSSLAIMSGKDNLGYESGSGAGGCGFLCWNKKSKTRRAVKIKGTPVGGSRKVGRSTLFGECGKRRKKEGKR 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05524 1198 CDD HLD_clamp_pol_III_gamma_tau 591 654 IPR045085 -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 305 362 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 989 1012 - -
Trre16g05524 1198 CDD AAA 429 588 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 18 59 - -
Trre16g05524 1198 Coils Coil 724 754 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 339 362 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 75 94 - -
Trre16g05524 1198 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 418 819 - -
Trre16g05524 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 638 IPR027417 -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 768 799 - -
Trre16g05524 1198 Pfam DNA polymerase III subunits gamma and tau domain III 645 765 IPR022754 GO:0003887
Trre16g05524 1198 MobiDBLite consensus disorder prediction 1171 1198 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 182 205 - -
Trre16g05524 1198 SUPERFAMILY post-AAA+ oligomerization domain-like 662 763 IPR008921 GO:0003677|GO:0006260
Trre16g05524 1198 Gene3D - 655 769 - -
Trre16g05524 1198 Pfam DNA polymerase III, delta subunit 430 591 - -
Trre16g05524 1198 Gene3D - 407 589 IPR027417 -
Trre16g05524 1198 FunFam DNA polymerase III subunit gamma/tau 592 654 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 783 799 - -
Trre16g05524 1198 Gene3D - 593 654 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 24 41 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 123 163 - -
Trre16g05524 1198 SMART AAA_5 447 598 IPR003593 GO:0016887
Trre16g05524 1198 FunFam DNA polymerase III subunit gamma/tau 411 590 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 975 1021 - -
Trre16g05524 1198 MobiDBLite consensus disorder prediction 768 782 - -
Trre16g05524 1198 NCBIfam DNA polymerase III subunit gamma/tau 415 765 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05524 Trre-Chr16 57723746 57729344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05524 418 706 Core DNA Replication Machinery Family AT1G21690 24.242 3.22e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05524 - - gmx:100791561 1513.05