Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05523 ATGGAAGGAATAGGTGGTGGTGGTCATCCAGTACCTCGAACAGTTGATGAGGTTTTCAGCGACTACAAGGGCAGACGCGCTGGTTTGATCAAGGCTCTCACTACTGACGTTCAAAAGTTTTACCAGCTCTGCGATCCTGACAAGGAGAACTTATGCCTATATGGATATCCAAACGAAACATGGGAAGTGAATTTGCCGGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTAGGTATAAACTTTGCTAGGGACGGGATGCAGGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTTTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACTATCTTTGAGCTTGTGACAGGAAATGCTAAGCAATCGAAGGACCAACCAACCGCTCACAACAATGGTAGCAATAGCAAATACAAATCAAGTGGAAAGTCTCGTCAGTCTGAGCCTCAGGTCAAGGGTGTGAAGATGTCGGCACCACCCAAAGAAGAGGAGGACAGTGGTGAAGAAGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACTGATGAATTTTGGATCTGTTGTGATATGTGTGAGAGATGGTTTCATGGTAAATGTGTTAAAATTACTCCTGCTAAGGCTGAACACATCAAGCAATACAAGTGCCCCAGCTGCAGTATCAAGAGGCAAAGAGTTTGA 774 0.4509 MEGIGGGGHPVPRTVDEVFSDYKGRRAGLIKALTTDVQKFYQLCDPDKENLCLYGYPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGNAKQSKDQPTAHNNGSNSKYKSSGKSRQSEPQVKGVKMSAPPKEEEDSGEEEEDDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSIKRQRV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05523 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Trre16g05523 257 CDD PHD_AL_plant 204 253 IPR044104 -
Trre16g05523 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Trre16g05523 257 PANTHER CPG BINDING PROTEIN 12 256 IPR045104 GO:0006355|GO:0042393
Trre16g05523 257 MobiDBLite consensus disorder prediction 187 202 - -
Trre16g05523 257 FunFam PHD finger alfin-like protein 196 252 - -
Trre16g05523 257 MobiDBLite consensus disorder prediction 144 202 - -
Trre16g05523 257 MobiDBLite consensus disorder prediction 144 175 - -
Trre16g05523 257 Pfam PHD-finger 204 251 IPR019787 -
Trre16g05523 257 SMART PHD_3 203 251 IPR001965 -
Trre16g05523 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
Trre16g05523 257 SUPERFAMILY FYVE/PHD zinc finger 192 254 IPR011011 -
Trre16g05523 257 Pfam Alfin 14 141 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05523 Trre-Chr16 57716345 57720075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05523 1 255 Alfin-like Transcription Factor Family AT1G14510 78.431 2.17e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre16g05523 Alfin 9.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05523 K26274 - gmx:100807826 448.358