Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05518 ATGGCAATAGCAAGAGCAGCATCACCTACCATGAGCATGAGTATGAGTATGAGTATGAGCTTGAGCCATAGTCAGGAAGATGGAAATAATAATAATAATAATTCCAACGACAGCAATACTAAGGCAACTACAGTAGCAGTAGTAGATGATGATGATGATGATAATGATAATGATGATGATGATGATCACGAGCATGACTTGGTTATGCCTGGTTTTCGTTTCCATCCAACTGAAGAAGAGCTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGTAAACGTTTCAACGTTGAGCTCATTACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCTTTGGCAGCAATAGGAGAGAAGGAGTGGTACTTTTATGTGCCTCGAGATAGGAAGTATAGAAACGGAGATCGTCCGAACCGAGTAACGACTTCTGGTTATTGGAAGGCAACAGGAGCTGATAGGATGATTAGAACTGAAAACTTCCGTTCAATTGGACTCAAGAAAACCCTAGTTTTCTATTCTGGAAAAGCTCCTAAAGGTATCAGAACCAGTTGGATTATGAACGAGTATCGCTTGCCTCAACATGATACCGAAAGATATCAAAAGGGTGAAATATCTCTATGCCGGGTATACAAGAGAGCTGGAGTAGAAGATCATCCATCCCTCCCTCGTTGTCTCCCAATTACCAGACCATCATCATCAACAAGAGGTTCAGACAAGATTAATAAACAGCAGCAGCAGCAACAGCAGAATGAAATATTGGGAATGGGATTTGTTGTTGGACAATCATCAAAGACAGTAGTTAATAGTATTGATCATGATCATCATCAAATACTTAACAAAATGGATGTTGGAAGCAGTAGCAGCGCCATTCCCCCCGGTAATTCTTCAGATCATGTAACAACAGCTCTTGGACTTTCCAAGTACAGTCCTCCTCCTCATAACTACCGTACAGAGGAGGAAGAACAATTGATGATGATGCAGCAGCAGCAGCAGCAGCAGCCACCTAGGCAATTAGTACAATATGCTGCAGCAGGAAACTCTTTGTTTGTCCCTGTCTGCGGCGGCGCCATTTTCCCTGTTCCTGCAGCTTCAACTGCAGCAGCAGCAGCGAGTTGTTCTTCTTCTAATAACGGTACTGCAAGTGGTGCAATGATGATGGATGAACTCAATAGACTTGTAAGTTATCAACAGCAGCAGCAATACAGTTACAATGTTCAAAACAACATTCCTAATCCAAATCCAAATAATCACTTCTCTGCTTTGCTGATGCAACCAATGTCTCTCCCAAATCAACTGCCAACAAATTTCTCTGACCGACTGTGGGACTGGAATCCAATTCCTGAGGATCATCATAATCACCCCAACAGTAGTAGTAACAACACTACCTCCTTCAAGTAA 1407 0.4264 MAIARAASPTMSMSMSMSMSLSHSQEDGNNNNNNSNDSNTKATTVAVVDDDDDDNDNDDDDDHEHDLVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHDTERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSSTRGSDKINKQQQQQQQNEILGMGFVVGQSSKTVVNSIDHDHHQILNKMDVGSSSSAIPPGNSSDHVTTALGLSKYSPPPHNYRTEEEEQLMMMQQQQQQQPPRQLVQYAAAGNSLFVPVCGGAIFPVPAASTAAAAASCSSSNNGTASGAMMMDELNRLVSYQQQQQYSYNVQNNIPNPNPNNHFSALLMQPMSLPNQLPTNFSDRLWDWNPIPEDHHNHPNSSSNNTTSFK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05518 468 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 67 340 - -
Trre16g05518 468 MobiDBLite consensus disorder prediction 229 251 - -
Trre16g05518 468 MobiDBLite consensus disorder prediction 49 63 - -
Trre16g05518 468 MobiDBLite consensus disorder prediction 9 41 - -
Trre16g05518 468 Pfam No apical meristem (NAM) protein 70 194 IPR003441 GO:0003677|GO:0006355
Trre16g05518 468 Gene3D NAC domain 77 218 IPR036093 GO:0003677|GO:0006355
Trre16g05518 468 ProSiteProfiles NAC domain profile. 68 215 IPR003441 GO:0003677|GO:0006355
Trre16g05518 468 FunFam NAC domain-containing protein 35 77 218 - -
Trre16g05518 468 MobiDBLite consensus disorder prediction 224 251 - -
Trre16g05518 468 MobiDBLite consensus disorder prediction 1 41 - -
Trre16g05518 468 SUPERFAMILY NAC domain 68 214 IPR036093 GO:0003677|GO:0006355
Trre16g05518 468 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05518 Trre-Chr16 57697210 57699653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05518 67 249 NAC Transcription Factor Family AT2G02450 82.514 6.24e-112 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g05518 NAM 5.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05518 - - tpra:123910806 634.024