Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05503 ATGGGGGGTTTGGAACACGTTCTTGCCCAATTAACAATAAACACCAACATTGTCAACAAACTCATTCAAACAATCTCGCCATCCGACGTCGATTATCGCTCTAAAATCGCCATCATACTCAGAACCCTAGAAGATCAATTGCGCAAAGCATCTATCCATGAATGGATGCTTGAACTTCTCGAGGTACTTGAACAACTTTTTCTTCTTCATTCTAAACCAACCACCACCTTCTTTCAAGACGCTTATTGCGCCATTGCAGTTGACTCTACTTTGAAGTACCTTCATGTCACAACATCACGCCCTAACTATCTCCAAGCTGTCGAGACTATATGGTACGGTAGGGTTCACCACATGGAGATGTCTTGGCAAAGTGATTTGTTCTCTCACGAATTAGAAAACTGGAAAACTCAAATCAGGAATTCCCTCTTGGACCCACGGATTATGAAAAACCTCGCTTGCATTCCAAATACTCGACGGAATGCACTTCAAAAGCTTGAAGTTTTTTTGGTTGAAGCTTGGGATAACCTAGGTCCGCCTCAGAATTTGGATGTCATTCTCAATGACTCACGTGTCATCGCAAGTGTAATCAAAGGCAAGTCTATTAATACTGTTGATGCTGAGGGAATGGATGAAACAGCCTCTTGTAGCAAAATCAACTCTATGCCGATTGATGAGGTTCCAAAGACTGGGGAATCTCTTCAATGTAGTTCTGATGAGTTGGAAACCCAGGAAGTTGAGGACATGAATCAAGAGGCACAGTTGGAAAACGACAGTTCAGATACTGTTGATACTGAGAGAATGGATGCAACAACCTCATATTGCAAAATCAACTCTATGCCGATGGATGAGGTTCCAGAGATTGGGGAATCTCTTCAATGTAGTTCTGCTGTGTTGGAAAACCAGGAAATTGAGGACGTGAATCAAGAGGGACAGTTGGAAAGCAATAGTCCAGATGCATATGTACCCATCTTGCAAGCTTGCCAAAGTATTAATAATAACAAGGCTAATCATAAAAAGACAACTTCTGCCCATCAGAGTGATGTTCATCGGCCTAGCTTGATGGAACCAAATTGTTCTGCTCGTACTCATGAGTGGGATGATTCGATTGGCTTGCAGGGAGGAACAAGTGACACGAGTAAAATTAGTTTGCCTAGTCCAAAAATGAGGAAACTTCCTCCATTTGAGGATTATAAAGACAAAGACATAAAAAAAAGGAGAAAGCACAATTCATGGAGTCAATTGGAAGAGGATAATCTAAGGGTTGGAGTAAAAGCATTTGGCCATAACTGGAAAAATATCTTTAATTCTTTTACATTTGAAGGGAGAACCCCAGTTGATTTGAAAGACAAATGGAGAAACATGCTCAGGAATGGACAAGCACAAGAATGA 1389 0.4118 MGGLEHVLAQLTINTNIVNKLIQTISPSDVDYRSKIAIILRTLEDQLRKASIHEWMLELLEVLEQLFLLHSKPTTTFFQDAYCAIAVDSTLKYLHVTTSRPNYLQAVETIWYGRVHHMEMSWQSDLFSHELENWKTQIRNSLLDPRIMKNLACIPNTRRNALQKLEVFLVEAWDNLGPPQNLDVILNDSRVIASVIKGKSINTVDAEGMDETASCSKINSMPIDEVPKTGESLQCSSDELETQEVEDMNQEAQLENDSSDTVDTERMDATTSYCKINSMPMDEVPEIGESLQCSSAVLENQEIEDVNQEGQLESNSPDAYVPILQACQSINNNKANHKKTTSAHQSDVHRPSLMEPNCSARTHEWDDSIGLQGGTSDTSKISLPSPKMRKLPPFEDYKDKDIKKRRKHNSWSQLEEDNLRVGVKAFGHNWKNIFNSFTFEGRTPVDLKDKWRNMLRNGQAQE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05503 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 403 459 IPR017930 -
Trre16g05503 462 MobiDBLite consensus disorder prediction 369 383 - -
Trre16g05503 462 SMART sant 407 457 IPR001005 -
Trre16g05503 462 Gene3D - 400 461 - -
Trre16g05503 462 Pfam Myb-like DNA-binding domain 409 455 IPR001005 -
Trre16g05503 462 ProSiteProfiles Myb-like domain profile. 403 455 IPR001005 -
Trre16g05503 462 PANTHER MYB TRANSCRIPTION FACTOR 4 456 - -
Trre16g05503 462 CDD SANT_TRF 411 456 - -
Trre16g05503 462 MobiDBLite consensus disorder prediction 247 266 - -
Trre16g05503 462 MobiDBLite consensus disorder prediction 365 394 - -
Trre16g05503 462 SUPERFAMILY Homeodomain-like 405 456 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05503 Trre-Chr16 57568416 57570692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05503 374 455 Single Myb Histone (SMH) Gene Family AT1G15720 39.535 1.79e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g05503 Myb_DNA-binding 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05503 - K11111 tpra:123910825 645.195