Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05500 ATGAAACGACTCGCCGACGAATCCGCCGTCGCTACTATACCCAAACCAGTCTTCCTCACCAAAGCTGAGCGTGAACAGCTTGCTCTTCAACGCCGTCACGATCAAATCGCCGGTCACAAGCGCAACCAAGAACAACTTCTCCTTTCCACTAATAACCGCCCCTCCGATCCCAAACCCTCAGACTCCGACCGCCGAGACCGCGATCGTGATCGTGACCGTGAGCGTGACAGAGATAGGGATAGTTACAGAGACAGAGACAGAGACAGAGAAAGGGATAGAGATAGAGACAGGGAAAGAGAACGAGAAAGGGAAAGGGAAAGGGATAGAGATAGAGATAACAGAGATCGGGAACGAAGAAACCGTGACAAGGAACGTGAAGAAGAGAATAAGGCTCGCGAGCGTGTTCGAGAGGAGAAGCTAGCGGAGAGGGAGCGTGAGAAAGAGCTTGAATCGATCAAGGAACAATACCTAGGTTCTAAAAAACCTAAAAAGAGGGTTATTAAACCTAGTGAGAAATTTCGATTTTCATTCGATTGGGAAAATACTGAAGATACCTCTCGTGATATGAATAACCTTTACCAAAACCCTCACGAGGCTCAGCTTCTCTTCGGTCGAGGGTTTCGTGCTGGGATGGACCGTCGTGAACAGAAGAAGCTTGCTGCTAAGAATGAAAAAGATTTGAGGGACCAAATCAGGAAGAAGGATGGCATTGAGGAGAAGCCAGAGGAGGCTGATGCTCAGCGGCGTAAGGAGGAGGCTGCGGAAATGTATGACACTTTTGATATGAGGGTTGACCGCCATTGGAGTGAGAAGAAGCTTGAAGAGATGACAGAGAGGGATTGGCGGATATTTAGGGAGGATTACAACATTTCCTACAAAGGTTCAAAGATTCCTCGCCCTATGAGGAGTTGGGTTGAGAGCAAGTTGAGCCAAGAGCTTTTGAAGGCTGTGGAGAAGGCTGGCTACAAAACCCCTTCTCCTATTCAGATGGCTGCTATTCCCCTTGGCCTTCAGCAGCGTGATGTTATCGGTGTTGCAGAGACAGGTTCTGGGAAGACTGCTGCATTTGTTCTTCCTATGTTGAGTTATATCACAAGGCTTCCTCCTATTAGTGAGGAGAATGAAGCTGAGGGTCCTTATGCTGTTGTTATGGCGCCAACTCGTGAGCTTGCTCAGCAGATCGAGGATGAGACTGTTAAATTTGCTCAGTATATGGGAATTAAAGTGGTTTCCATTGTTGGTGGACAGTCTATTGAGGAACAAGGGTTTAAGATAAGGCAGGGTTGTGAAATTGTGATTGCCACTCCCGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCGGTTCTCAATCAGTGTAATTATGTTGTTCTTGATGAGGCTGATCGAATGATTGATATGGGGTTTGAGCCGCAGGTCATGGGTGTGCTGGATGCTATGCCTTCCAGTAATCTCAAACCTGAGAATGAAGACGAGGAGCTTGACGAGAAGAGGATTTACAGGACCACTTATATGTTTAGTGCCACCATGCCTCCTGCTGTAGAGAGGCTTGCTAGGAAGTATTTGAGGAACCCTGTTGTGGTGACTATCGGCACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAATCCTATAAGCTTCATAGATTGTTGGATGAGCTTAATGACAAGACTGCAATTGTGTTTGTTAACACCAAGAAGAATGCTGATTTTCTTGCTAAGAATTTGGATAAGGAGGGCTATCGCGTGACCACTTTGCACGGAGGAAAATCACAGGAACAGAGGGAGATTAGTCTTGATGGATTTAGGGCCAAGAGATATAATGTGCTTGTTGCAACTGATGTTGCTGGACGTGGTATTGACATACCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACCCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTTAAGCAGATGCTCATTCAGAGTAACAGTCCTGTTCCACCTGAGCATATATTTGGATTGCAGCATATTGCTTTACTTCCCATAGGTGTCTCTACTGAGTTGGGATACTTTGGTTTTTTGCTCCCGAAATACCAGAGATGCTCATTGATTTTGTTTCTCCTCCTCCATGGTGTTCTTAAAGGATCTATCTGTGACTTGGAATAG 2241 0.461 MKRLADESAVATIPKPVFLTKAEREQLALQRRHDQIAGHKRNQEQLLLSTNNRPSDPKPSDSDRRDRDRDRDRERDRDRDSYRDRDRDRERDRDRDRERERERERERDRDRDNRDRERRNRDKEREEENKARERVREEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNNLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDLRDQIRKKDGIEEKPEEADAQRRKEEAAEMYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKSYKLHRLLDELNDKTAIVFVNTKKNADFLAKNLDKEGYRVTTLHGGKSQEQREISLDGFRAKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPEHIFGLQHIALLPIGVSTELGYFGFLLPKYQRCSLILFLLLHGVLKGSICDLE 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05500 746 Gene3D - 533 696 IPR027417 -
Trre16g05500 746 MobiDBLite consensus disorder prediction 30 165 - -
Trre16g05500 746 Pfam Helicase conserved C-terminal domain 555 660 IPR001650 -
Trre16g05500 746 FunFam ATP-dependent RNA helicase RhlB 532 700 - -
Trre16g05500 746 CDD SF2_C_DEAD 540 669 - -
Trre16g05500 746 MobiDBLite consensus disorder prediction 213 251 - -
Trre16g05500 746 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 457 465 IPR000629 -
Trre16g05500 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 555 700 IPR001650 -
Trre16g05500 746 CDD DEADc_DDX23 313 529 - -
Trre16g05500 746 SMART helicmild6 579 660 IPR001650 -
Trre16g05500 746 MobiDBLite consensus disorder prediction 57 161 - -
Trre16g05500 746 SMART ultradead3 321 543 IPR014001 -
Trre16g05500 746 MobiDBLite consensus disorder prediction 42 56 - -
Trre16g05500 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 333 528 IPR014001 -
Trre16g05500 746 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 241 694 - -
Trre16g05500 746 Pfam DEAD/DEAH box helicase 327 517 IPR011545 GO:0003676|GO:0005524
Trre16g05500 746 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 302 330 IPR014014 GO:0003724
Trre16g05500 746 FunFam probable ATP-dependent RNA helicase DDX23 263 531 - -
Trre16g05500 746 Gene3D - 263 532 IPR027417 -
Trre16g05500 746 Coils Coil 107 155 - -
Trre16g05500 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 681 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05500 Trre-Chr16 57517896 57523499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05500 300 682 Eukaryotic Initiation Factors Gene Family AT3G19760 30.990 7.43e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05500 K12858 - gmx:100799264 1061.21