LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g05495	ATGTCGGCCAAGTCAACGGAGACCTTGCAGCAGCAGCATTCCAACTCATCTTCCCAAATAATGTTCAACCACAACTACGGCACCTCCGGCGTGTGTGAGATCACAGAGGAGGAAGTCCAGACAATCAACCACCACCAGCTTGATAATGAAATTGAAGAAGAAGAGTGTGTTTATGTGGCAGTTGGTAAGAGTGATACAAGCATGGAAGCACTCTCATGGACACTCAATAACTTGATTACTCACCACTCTACCAACACCATGCTCTATCTCATACATGTTTTCCCAGAAATCAAACACATTCCTCATCCATTGGGAGTAGGAATGATTGCAAGGAATCAGGTGAGTGCTGAGCAAGTGGAGATTTATATGGACCAAGAAAGAGACAAGAGGAGACAACTCCTTCACAAGTTCCTCCATTCTTGCTCTCTTTCCAAGGTTAAGGTGGACACCATCCTAATAGAAAGTGACTTGGTTGCTAAAGCCATCCTTGACCTTATTCCCATTCTTCAAATCACTAATTTAGTCATTGGTGCCAACAAATTCAATCTAAGAAAATCAAGATCAAAGAAAGGAAATGGTGGTGTTGCTGATCAGGTAGTGCAGAATGCACCACAAAATTGCAAGGTTAGAGTTATTTGTGAAGGTAAGGAAGTGAATGAGCAAATGATGATGATGATGTCACCCTTACCCTCTCCTCAGATAATTACCACTACTACCAACTCTGCAAATAATGATACTTCGGTGAACACTAAAGAAAATGATTCTGTTTTATGTGTTTGTTTCAAGCCAAAGTTTAAATAA	801	0.4107	MSAKSTETLQQQHSNSSSQIMFNHNYGTSGVCEITEEEVQTINHHQLDNEIEEEECVYVAVGKSDTSMEALSWTLNNLITHHSTNTMLYLIHVFPEIKHIPHPLGVGMIARNQVSAEQVEIYMDQERDKRRQLLHKFLHSCSLSKVKVDTILIESDLVAKAILDLIPILQITNLVIGANKFNLRKSRSKKGNGGVADQVVQNAPQNCKVRVICEGKEVNEQMMMMMSPLPSPQIITTTTNSANNDTSVNTKENDSVLCVCFKPKFK	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g05495	266	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	58	209	-	-
	Trre16g05495	266	Gene3D	HUPs	46	224	IPR014729	-
	Trre16g05495	266	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	11	266	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g05495	Trre-Chr16	57496071	57497237	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g05495	54	221	U-box Gene Family	AT1G01680	29.070	4.44e-11	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g05495	-		-	gmx:100527773	296.589