Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05489 ATGGAAACTGGAGGAGGTTTTCATGGTTACCGCAAGCTCCCCAACGCTACCCCTGGGGCACTGAAGTTATCAGTCTCTGAGATGAACACGAGGCAGCAAGTGGGAGAACAGAACAATAACCACTCATCAGGAGGAACAGAACAATACAATGAATGCACTGTGAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATCATGCGAAAGATTCTACCACCACATGCAAAAATATCTGACGATGCAAAAGAAACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTCATAACTGGAGAAGCAAATGAACGTTGTCAGAGAGAGCAAAGGAAGACAATAACTGCTGAAGATGTTCTTTGGGCTATGAGTAAGCTTGGTTTTGATGATTACATTGAACCTCTTACTATGTATCTTCATCGTTATCGCGAGCTCGAAGGCGATCGTACTTCGATGAGAGTTGAACCGTTGGGAAAGAGAGGTATGGATCAATATGGAAATGCTGCTTTAGGGGGTTTTGTTCCACAGTTTCATATTGGTCATCCAAATGGAGGGTATTATGGTAATGCACCAACTTATATGATGAGGGATGGTAATAACAATAATGGAACTAATGCTGTTGGAGGTTCTTCTCATTCTCATGCTGCACATGCTGAAGCCAATGGTCATCATCATCATCATCATCATCAATATAAATAA 702 0.4188 METGGGFHGYRKLPNATPGALKLSVSEMNTRQQVGEQNNNHSSGGTEQYNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRVEPLGKRGMDQYGNAALGGFVPQFHIGHPNGGYYGNAPTYMMRDGNNNNGTNAVGGSSHSHAAHAEANGHHHHHHHQYK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05489 233 SUPERFAMILY Histone-fold 57 154 IPR009072 GO:0046982
Trre16g05489 233 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Trre16g05489 233 PRINTS CCAAT-binding transcription factor subunit A signature 126 144 - -
Trre16g05489 233 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Trre16g05489 233 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 124 IPR003958 -
Trre16g05489 233 FunFam Nuclear transcription factor Y subunit B-6 49 165 - -
Trre16g05489 233 MobiDBLite consensus disorder prediction 199 233 - -
Trre16g05489 233 ProSitePatterns NF-YB/HAP3 subunit signature. 91 107 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre16g05489 233 Gene3D Histone, subunit A 46 169 IPR009072 GO:0046982
Trre16g05489 233 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 33 213 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05489 Trre-Chr16 57448330 57452054 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05489 5 196 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.736 3.34e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre16g05489 CBFD_NFYB_HMF 6.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05489 K08065 - gmx:100800011 281.567