Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05487 ATGGCTGAATCAGATGATGAATCAGGTGGTCAAGCTTCAGGGAGCAGAGAACTACTGCAAGAAAGGCTCCTTCCCATAGCAAACGTGGGGAGGATCATGAAGAAAGTGTTACCGGCGAAAGCAAAGATATCAAAGGAATCAAAAGAAACTATGCAAGAGTGTGTATCAGAGTTCATAAGTTTCATAACAGGTGAAGCATCTGAAAAGTGTCAGAAAGAGAAAAGAAAGACAATAAACGGTGATGATCTTTTGTGGGCTATGACTACACTTGGTTTTGAAGAATATGCTGAACCTCTTAAGGGTTACCTTCACAGGTATAGGGAGATTGAAGGTGACAAGAATTTTTCTATGACTATGATTGGTAAGGAGCAGCAGGGTAGTAGTAGTGCTGATAATCGATTCTTCCAAGGGTGA 414 0.4106 MAESDDESGGQASGSRELLQERLLPIANVGRIMKKVLPAKAKISKESKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLLWAMTTLGFEEYAEPLKGYLHRYREIEGDKNFSMTMIGKEQQGSSSADNRFFQG 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05487 137 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 122 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre16g05487 137 FunFam Nuclear transcription factor Y subunit B-3 11 135 - -
Trre16g05487 137 SUPERFAMILY Histone-fold 20 115 IPR009072 GO:0046982
Trre16g05487 137 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Trre16g05487 137 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Trre16g05487 137 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Trre16g05487 137 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre16g05487 137 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Trre16g05487 137 Gene3D Histone, subunit A 12 134 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05487 Trre-Chr16 57439351 57439764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05487 1 113 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.359 4.31e-60 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre16g05487 CBFD_NFYB_HMF 5.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05487 K08065 - gmx:100778034 186.422