Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05473 ATGGGCAGTGATGAGGCTCAACAGTTATTGCTTTCACAGTCAAGGGAACATTCTCATCTTAATGAGAAGAGTGACCTTCTTCAGAGAAGAAGACCGCGGCGTGTTGGCACTTCAGAGACAGATATCAATATGCCGCAAGAACAGAATGGTGTCCTCCAAACCCCTTTACTACCTCAATGTATAGATGAAAAACATGAAGCAGAATTCAATTTCAGGCCAGTGTTCTTGTGTTTAGCAGCTTACCTAGGTACAGGTACCTTATGTTTCTTTCTCACAAGTTACCAAATTCAGGGTATAAAAACAAATGGATTTCTTGATGCCCTTTACTTCTGTGTTGTGACAATGACTACTGTTGGATATGGTGATCTTGTTCCTAATAGCACTATAGCGAAATTACTTGCTTGCATTTATGTCTTCACTGGTATGGCTCTTGGTGGCTTAATTCTCAGCAAAGCGGCAGATTACATTGTCGAAAAACAAGAAATATTTGTTGTTAAAGCCATGCACAAAGCTGAAAAATTTGGTCCAGAAGAAATTTCTAAAGAACTTGGAACTAATAAAAGCAAATACAAGTTTGTGCTAGCAGCATCTACTTTTCTTGTGCTCATGATTGTAGGGACTGTTTTTCTGTATTTTATCGAAAAACTAGATTTTGTGGATGCACTCTATTGTGTTTGTTCGACAGTCACTACTTTAGGCTATGGAGATAAGAGCTTCTCAAGTGCTGCTGGTAGGACTTTTGCTGTGTTTTGGATATTGAGCAGCACCATCTGCTTGGCTCAGTCTTTTGCATATCTTGCTGAACTCTATACTGAAGATAGACAAAGATCACTCGCAAAAATGGTTCTTGCGCGAAAATTGTCTCTCCGTGATCTTGAGGCAGCAGATCTTGATGGAGACAAAGCTGTCAGTGCTGCAGAGTTCGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTACAGTTGTGATGGAACTTTTTAGAAAACTAGACTGTGATCAATCAGGAACTCTGACTGAAGCTGATATCAGAAATTCTGAATTCTGA 1059 0.3938 MGSDEAQQLLLSQSREHSHLNEKSDLLQRRRPRRVGTSETDINMPQEQNGVLQTPLLPQCIDEKHEAEFNFRPVFLCLAAYLGTGTLCFFLTSYQIQGIKTNGFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACIYVFTGMALGGLILSKAADYIVEKQEIFVVKAMHKAEKFGPEEISKELGTNKSKYKFVLAASTFLVLMIVGTVFLYFIEKLDFVDALYCVCSTVTTLGYGDKSFSSAAGRTFAVFWILSSTICLAQSFAYLAELYTEDRQRSLAKMVLARKLSLRDLEAADLDGDKAVSAAEFVVYKLKEMGKINQEDITVVMELFRKLDCDQSGTLTEADIRNSEF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05473 352 MobiDBLite consensus disorder prediction 1 42 - -
Trre16g05473 352 Pfam Ion channel 77 157 IPR013099 -
Trre16g05473 352 Pfam Ion channel 199 270 IPR013099 -
Trre16g05473 352 MobiDBLite consensus disorder prediction 1 15 - -
Trre16g05473 352 PRINTS Two pore domain K+ channel signature 230 239 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre16g05473 352 PRINTS Two pore domain K+ channel signature 113 141 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre16g05473 352 SUPERFAMILY Voltage-gated potassium channels 69 158 - -
Trre16g05473 352 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Trre16g05473 352 Gene3D - 284 351 - -
Trre16g05473 352 Gene3D - 180 277 - -
Trre16g05473 352 SUPERFAMILY Voltage-gated potassium channels 184 285 - -
Trre16g05473 352 MobiDBLite consensus disorder prediction 16 37 - -
Trre16g05473 352 Gene3D - 56 179 - -
Trre16g05473 352 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 102 324 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre16g05473 352 SUPERFAMILY EF-hand 292 349 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05473 Trre-Chr16 57365717 57366984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05473 53 347 Ion Channels AT5G55630 59.661 1.15e-123 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05473 K05389 - gmx:100799492 520.005