Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05472 ATGAAGCTCCACTACCTTAACTCACTGTTTCTTCTTGTGATCATCTTGGATCTAAGTACCAATATCTATGGTCTCTCATCATCAGAACTTGTGCCTAAAAAGATATTGAATCCCTTATTACCACCTCCTGAAGCCTTGCTTTCAATTGATCACTATCATGGAACATGTCCAGATGCTGAAGGCATTATCTCACAAAAAGTTGCTGCTTGGATTAAGAAGGACCCTACCTTGGCCCCATCCATCATCCGCTTGCATTTCCATGATTGTGCCATCAGAGGATGTGATGCATCAATTTTGCTTAACCACTTAGGGAGTGAGAGAAAAGCTTTTGAGAGTAGATCCTTGAGAGGTTTTCAATTGATTGATGAAATTAAGGTTGAGCTAGAGAAAAGGTGTCCAAGAACAGTGTCTTGTGCTGACATTCTCACTGCTGCTGCAAGAGATGCAACAATTTTAGCTGGAGGACCATTTTGGGAAGTCCCATTCGGCCGAAAAGACGGCAAGATATCATTAGCCAAAGAAGCAAATTTGGTTCCACAAGGACATGAAAACATCACAGGTTTGATTGATTTTTTTAAAGAAAGAGGACTTGACATGCTTGATTTGGTTACTCTCTCAGGCTCACACACAATTGGAAGAAGCACTTGTTATTCTGTTATGAATAGGATTTACAATTTCAATGGAACTGGTAAACCTGATCCTTCACTTAGTATCTATTACTTGAAGATGTTGAGGAAAAGATGTAAAAAAGATTTGGATTTGGTGCACCTTGATGTTATAACTCCTAGGACTTTTGACACAACATATTACACAAACCTTAAGAGGAAGGTTGGTTTGTTGTCAACAGATCAATTGTTGTTTTCTGATGAAAGGACAGGTCCTTTTGTGGAAGCATTTGCAACACAGGCTTTTCTTTTTACCAGTCAATTTGCTGTGTCCATGGTCAAGCTTGGGAATGTTCAAGTTTTGACTAGGCCTAATGAAGGTGAAATCAGAGTCAATTGCAATTATGTTAATCATGTTTGA 1026 0.3899 MKLHYLNSLFLLVIILDLSTNIYGLSSSELVPKKILNPLLPPPEALLSIDHYHGTCPDAEGIISQKVAAWIKKDPTLAPSIIRLHFHDCAIRGCDASILLNHLGSERKAFESRSLRGFQLIDEIKVELEKRCPRTVSCADILTAAARDATILAGGPFWEVPFGRKDGKISLAKEANLVPQGHENITGLIDFFKERGLDMLDLVTLSGSHTIGRSTCYSVMNRIYNFNGTGKPDPSLSIYYLKMLRKRCKKDLDLVHLDVITPRTFDTTYYTNLKRKVGLLSTDQLLFSDERTGPFVEAFATQAFLFTSQFAVSMVKLGNVQVLTRPNEGEIRVNCNYVNHV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05472 341 PRINTS Plant peroxidase signature 312 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Plant peroxidase signature 56 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Plant peroxidase signature 154 169 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Plant peroxidase signature 116 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Plant peroxidase signature 80 100 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Plant peroxidase signature 135 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Plant peroxidase signature 200 212 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Plant peroxidase signature 272 289 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Plant peroxidase signature 256 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Haem peroxidase superfamily signature 78 92 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Haem peroxidase superfamily signature 154 166 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Haem peroxidase superfamily signature 258 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Haem peroxidase superfamily signature 136 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 PRINTS Haem peroxidase superfamily signature 201 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 ProSiteProfiles Plant heme peroxidase family profile. 46 339 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 FunFam Peroxidase 50 189 - -
Trre16g05472 341 SUPERFAMILY Heme-dependent peroxidases 47 339 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 CDD secretory_peroxidase 48 338 IPR033905 GO:0004601|GO:0042744
Trre16g05472 341 ProSitePatterns Peroxidases active site signature. 78 89 IPR019794 GO:0004601
Trre16g05472 341 ProSitePatterns Peroxidases proximal heme-ligand signature. 201 211 IPR019793 -
Trre16g05472 341 Gene3D - 50 339 - -
Trre16g05472 341 Pfam Peroxidase 64 301 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 FunFam Peroxidase 179 317 - -
Trre16g05472 341 PANTHER - 44 339 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre16g05472 341 Gene3D Peroxidase, domain 2 179 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05472 Trre-Chr16 57361173 57362291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05472 42 339 Peroxidase AT1G30870 49.333 9.50e-106 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05472 K00430 - gmx:100792775 562.762