Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05463 ATGAAGGAGGAATGTTTCCCCCTGGAATCATACCCTGAAATCGCTGCTTTCATAGACTGTGATTCTCCTTCATATGCCAGTGTATCATCTAACAAGAGTCCATTTTCTCCGCAAGATTCTCAATCGCAATCATGCCATTCAGATCATCAACAATCATCTGACAACACTTATGGATCGCCAATAAGTGGGATGTCCAGTGTTGATGATGGCCATGACTTGAAGCACAAACTTAGAGAACTGGAGAATTCGTTGTTGGGGTCTGATGATTTTGATATTGTTGACAGTTACGGAAACTGCATGGAGACTAGCCTCCACGGAGCATCTCCATCAGCTAAATATGATTGGGATCTAATTGCAGAAAACATTCCAAAGCTTGACGTGAAAGAAGTCCTCTTGCTATGTGCACAGGCTGTGTCTGATGGTGATATTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGCGAAGATGGTATCAGTCGCTGGAGATCCTATCCAGAGGCTAAGTGCTTACTTGTTGGAAGGGCTTAGAGCTAGATTAGAATCGTCTGGAAGCTTGATCTACAAGGCGTTGAAATGTGAACAACCAACGAGCAAAGAACTATTGAGTTACATGCACGTCCTGTATCAGATTTGTCCGTATTTTAAGTTTGCATACATATCTGCAAATGCTGTTATTTCTGAAGCAATGGCAAATGAATCCAGGATTCATATAATTGATTTCCAAATTGCACAGGGAACACAATGGCTTCTACTTATTAAAGCGCTTGCAAGCAGGCCTGGCGGACCACCTTTTATTCGGATAACAGGTGTGGACGATTCACAATCATTTCATGCGCGCGGTGGAGGACTTCAGATTGTAGGAGAAAGGATTTCAGACTTTGCCAGGTCTTGTGGAGTTCCGTTTGAGTTCCACAACACTGCAATGACTGGTTGCGAAGTCCAGCGGGAAAATCTTAAAATTAGACCTGGAGAAGCCCTTGCCGTCAATTTTCCCTATTTTTTGCACCATATGCCGGATGAGAGTGTGAGCATAGAGAACCATAGAGACAGATTGTTGAGATTGGTTAAGAGTTTGTCTCCTAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAATACTTCTCCATTCTATCATAGGTTTGTGGAGACAATGGATTATTACACAGCTATGTTTGAATCAATAGATGTGGCTTGTGCCAAAGACGATAAGAAGCGGATTAGTACGGAGCAGAACTGCGTAGCACGGGACATTGTTAACATGATAGCCTGCGAGGGGATTGAGAGGGTAGAGAGGCATGAAGTTTTTGGAAAGTGGAGGATGAGATTTTCCATGGCTGGATTTAGACAATGCTCATTGAGTTCTTCAGTGATGCATTCTGTGCAAAATATGTTGAAGGACTATAATCAAAATTATAGACTTGAACATAGAGATGGTGCTCTCTATCTTGGTTGGATGAAGAGAGCTATGGCCACCTCTTCTGCTTGGAGATGTAACTGA 1503 0.4278 MKEECFPLESYPEIAAFIDCDSPSYASVSSNKSPFSPQDSQSQSCHSDHQQSSDNTYGSPISGMSSVDDGHDLKHKLRELENSLLGSDDFDIVDSYGNCMETSLHGASPSAKYDWDLIAENIPKLDVKEVLLLCAQAVSDGDIPTARGWMDNVLAKMVSVAGDPIQRLSAYLLEGLRARLESSGSLIYKALKCEQPTSKELLSYMHVLYQICPYFKFAYISANAVISEAMANESRIHIIDFQIAQGTQWLLLIKALASRPGGPPFIRITGVDDSQSFHARGGGLQIVGERISDFARSCGVPFEFHNTAMTGCEVQRENLKIRPGEALAVNFPYFLHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFYHRFVETMDYYTAMFESIDVACAKDDKKRISTEQNCVARDIVNMIACEGIERVERHEVFGKWRMRFSMAGFRQCSLSSSVMHSVQNMLKDYNQNYRLEHRDGALYLGWMKRAMATSSAWRCN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05463 500 ProSiteProfiles GRAS family profile. 118 498 IPR005202 -
Trre16g05463 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 77 491 IPR005202 -
Trre16g05463 500 MobiDBLite consensus disorder prediction 24 63 - -
Trre16g05463 500 Pfam GRAS domain family 128 498 IPR005202 -
Trre16g05463 500 MobiDBLite consensus disorder prediction 24 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05463 Trre-Chr16 57314109 57315611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05463 2 500 GRAS Transcription Factor Family AT4G17230 61.155 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre16g05463 GRAS 4.5e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05463 - - gmx:100792931 772.696