Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05455 ATGACTCCGATCGTAACCCCTATCCTTCAACAACAACAACAACAACAACAACAACAAAATCGTTCATCGTCGAAACGTAAATTAGACGATGACGATGAAAACAACGTGTCAGATGATGACTTAGTCTATGTTAGAATGAGGAAAGAAGAAACGACAAAAACAACATTTAATCCATGGAGCGGTGGTGGTGGTGGTGGTAGTGGTGGTGGTGTTGGTGGTTGTAATGGTGGTTTGTTGAAGAAAAAATCAGATATTCAATTTTTTATTCGAATGATGCCAAAAGGAAATAGTCTTGTTATGCACGCTTATCCAGAAGATACTGTGAAATCAATTCATGAACGGTTAGTAGAATTGCATAGTATACCTATTTTTGAACAGAGGTTGATTTTTAGAGGTAAACAGCTTCAGTGGGAACAAACTATTGCTCAGTGTGGTATACAAAGAGACGTTAGTCTTGAACTCGTTGGTCGAATTCGGAGTACAGAACATCCTCAAGCTTGGCAAGTTGTTAATGATATGGTTAATGTTGTTTATGATCTTTGTCGTCAACAACCTGTTGAGGAAGCTCCTAAAACTGTTAAGAGTCTTCTCACTAGTTACATCAGCTTGGCTCTCACTCCTAAACCCAAACTTGATGCTGATTCTGCTACAAGCTATTTCGGGATTTTCATTAATTCCGCTGCCATTTCAGTTCTTGTTACTCTCTATGTTTCACCTTACAAGGGTAACAAGGACACTGCTGATTCTTGTATTAGGCATTTTTTGAATTGTTGTAGGACTTCATTGTCTAAGATATTTCATACTCAGGCTGCACGTGTGGCGTTGGAGTTTTGTAAATTTCTTAGGAGAGGAGCGGGGACTCATGATCCTTTGTATCTCTTTTGTCGTACTAGTTTGGGGGGTTTTCTGGAGGATGCTGAAGTTTCACTTGCTTCTTCTGAGGATCAGAATTTTAAAGGTTTGGTATTAGTACAAGATTTGTTTCCGTTTGTTCGCGAACTTGCTGATAGTTTGTTGATTAATTTGGAGTCGAGCATTGATTCCCCTTCACTTGCTTGTCCTTTGTTGACCAATATTGGGGATTTTACTGCATTTTTAGTCCCTGTGAGGACTGGAATTGAGCAACATCAGGCTCTCCGGGGTTGTGTCCCTTACCACAAGCTCGATAGGAACGGTTTGGTTGTTGAAGAGATTGAATACCTTCATCTGTTGTACAATCAGATGTTGTGCAAAATTGATACATGCCTTCAAAAAATGGGGAAGAGATTCTTTGACAAGGAAATGGTGCATGAGGAAAATTATTTTTATCCTGCTTGTTCTCTCTATCTTTCCCTTTTGAAGGAGTTGCATAATCTTTCTAAGCTTTATGACGGCGCTCCAGAAAAGCTCCGGGGTCTTTTGATGCGTCAAAAGACTGTGATGTGTCTGATGATCGTTAAATATGCAAAGAGGGCCGACGAGCATCAGTGGATTCTCGAGCACAAGAATGTCACTAATTTCGAGACTAGGAGGCATCTGGCCATGATGATTTTCCCGGAGGTAAAAGAAGACTATGAGGAGCTACATGAGATGCTCATTGACAGGTCTCAGTTGTTAACTGAATCTTTCGAATACATTGCACGGGCTGATCCCGAATCACTGCGTGCTGGACTGTTTATGGAATTCAAAAACGAGGAAGCCACTGGCCCTGGTGTGCTGAGGGAGTGGTTCCTTTTGGTTTCTCAAGCAATATTCAATCAGGCAAACGCCCTTTTTGTTGCCTGCCCAAACGATCGAACAAGGTTTCTCCCCAATTCTGCTTCCAAGGTACATCCTCTGCATCTTGAGTACTTCTGCTTCTGTGGTCGAGTTATTGCATTAGCTTTAATGCATAGCGTGCAAGTAGGTATTGTTTTTGATCACACATTTTTCTTGCAATTGGCTGGAAATCCTATTACTTTAGAAGACATAAGGGAAGCAGATCCTGACCTGTATAAAAGCTGCAAGCAGATATTGGACATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACGTTTGTTAGAGAAGTGGAGGAATTAGGACACAGGAAAGCAGTCGAGCTCTGTACTGGTGGAAAAAACATTGTAGTTAATAGTAAGAACAGGGTGAAGTATGTTGATCTTCTTATAAAGGATCGTTTTGTAACATCCATATCTGAGCAGGTGTCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCATGCTCAAAGCTCCAGCAGTTCTTCTTTCGAAGTTTAGAGCCTGAAGATCTTGATTATATGCTGCGTGGGAGTGAAGATGGCATTTCCATCGAAGATTGGAAAGCACACACCGAATATAATGGCTACAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTGGGGAGAATGACAGCTGAAGAAAAGAAGGTTCTTCTTTTCTTTTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTCTGTGGTTTGAGTTCCCGTCTCCACATTTACAAGTCCCATGAACCTTGCAATCGTCTTCCTTCATCTCATACATGCTTTCACCGGCTGTGTTTCCCAGTTTATCCGTCTATGCCTGTCATGGAAGCTCGTCTTAAAGTCATTACACAAGAACATATCGGCAGTAGTTTTGGTACTTGGTGA 2652 0.4099 MTPIVTPILQQQQQQQQQQNRSSSKRKLDDDDENNVSDDDLVYVRMRKEETTKTTFNPWSGGGGGGSGGGVGGCNGGLLKKKSDIQFFIRMMPKGNSLVMHAYPEDTVKSIHERLVELHSIPIFEQRLIFRGKQLQWEQTIAQCGIQRDVSLELVGRIRSTEHPQAWQVVNDMVNVVYDLCRQQPVEEAPKTVKSLLTSYISLALTPKPKLDADSATSYFGIFINSAAISVLVTLYVSPYKGNKDTADSCIRHFLNCCRTSLSKIFHTQAARVALEFCKFLRRGAGTHDPLYLFCRTSLGGFLEDAEVSLASSEDQNFKGLVLVQDLFPFVRELADSLLINLESSIDSPSLACPLLTNIGDFTAFLVPVRTGIEQHQALRGCVPYHKLDRNGLVVEEIEYLHLLYNQMLCKIDTCLQKMGKRFFDKEMVHEENYFYPACSLYLSLLKELHNLSKLYDGAPEKLRGLLMRQKTVMCLMIVKYAKRADEHQWILEHKNVTNFETRRHLAMMIFPEVKEDYEELHEMLIDRSQLLTESFEYIARADPESLRAGLFMEFKNEEATGPGVLREWFLLVSQAIFNQANALFVACPNDRTRFLPNSASKVHPLHLEYFCFCGRVIALALMHSVQVGIVFDHTFFLQLAGNPITLEDIREADPDLYKSCKQILDMDSDFIDSDALGLTFVREVEELGHRKAVELCTGGKNIVVNSKNRVKYVDLLIKDRFVTSISEQVSHFAKGFADILSCSKLQQFFFRSLEPEDLDYMLRGSEDGISIEDWKAHTEYNGYKETDIQISWFWEIVGRMTAEEKKVLLFFWTSVKYLPVEGFCGLSSRLHIYKSHEPCNRLPSSHTCFHRLCFPVYPSMPVMEARLKVITQEHIGSSFGTW 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05455 883 ProSiteProfiles HECT domain profile. 543 883 IPR000569 GO:0004842
Trre16g05455 883 CDD HECTc 522 881 IPR000569 GO:0004842
Trre16g05455 883 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 643 725 - -
Trre16g05455 883 Gene3D Hect, E3 ligase catalytic domains 523 750 - -
Trre16g05455 883 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g05455 883 SUPERFAMILY Ubiquitin-like 85 174 IPR029071 -
Trre16g05455 883 SMART hect_3 541 881 IPR000569 GO:0004842
Trre16g05455 883 Gene3D Hect, E3 ligase catalytic domain 643 725 - -
Trre16g05455 883 PRINTS Ubiquitin signature 138 159 IPR019956 -
Trre16g05455 883 PRINTS Ubiquitin signature 117 137 IPR019956 -
Trre16g05455 883 PRINTS Ubiquitin signature 96 116 IPR019956 -
Trre16g05455 883 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 86 881 - -
Trre16g05455 883 MobiDBLite consensus disorder prediction 1 41 - -
Trre16g05455 883 SUPERFAMILY Hect, E3 ligase catalytic domain 518 869 IPR035983 GO:0004842
Trre16g05455 883 Gene3D - 79 175 - -
Trre16g05455 883 Pfam HECT-domain (ubiquitin-transferase) 572 875 IPR000569 GO:0004842
Trre16g05455 883 FunFam E3 ubiquitin-protein ligase UPL5 767 882 - -
Trre16g05455 883 ProSiteProfiles Ubiquitin domain profile. 85 161 IPR000626 GO:0005515
Trre16g05455 883 MobiDBLite consensus disorder prediction 23 41 - -
Trre16g05455 883 Pfam Ubiquitin family 88 157 IPR000626 GO:0005515
Trre16g05455 883 SMART ubq_7 85 157 IPR000626 GO:0005515
Trre16g05455 883 Gene3D Hect, E3 ligase catalytic domain 767 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05455 Trre-Chr16 57236123 57241662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05455 85 160 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.895 3.25e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05455 - - gmx:100789233 1186.79