Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05438 ATGAACTTTGCTAGAGCTTCAATGGCAGGTTCATGGTTCAACAAGCTTCGTCTGCGAAGGTCTAAGAGTAATAAACCTTTACCAGAGCCTTCTTCTTCGTCTTCTAAGGCTCGGTTAAATTCTGATGCAGACAACATGGAAAGAAAAAGATTTGATAGTTTAGAATCATGGTCAATGATATTGGACTCCGAGAATGTCGAAACATGGGAAGCTTCAAAGGAGGATCAAGAAGAATGGACTGCTGATCTTTCTCAGCTTTTCATAGGTAACAAGTTTGCATCTGGTGCTCACAGTCGGATTTATCGTGGAATTTACAAGCAGAGAGCTGTTGCTGTTAAAATGGTGAGGATTCCTAATCAGAATGAAGAGAGAAGAACATTGCTAGAACAGCAATTCAAATCTGAAGTTGCTTTACTCTCACGTCTCTTTCATCCTAACATAGTGCAGTTTATTGCAGCATGTAAAAAACCACCTGTGTACTGCATAATAACAGAATACATGTCACAAGGAACTCTAAGGATGTATTTGAACAAGAAAGAGCCTTACTCACTTTCAATAGAAACTGTACTAAGGTTAGCACTTGACATATCAAGAGGTATGGAATACCTTCATTCTCAAGGTGTGATTCATAGAGACCTTAAATCAAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTGGCAGATTTTGGAACATCGTGTCTTGAAACGCGGTGCCGAGAAACAAAGGGAAATATGGGAACTTATCGTTGGATGGCGCCTGAGATGATTAAGGAAAAACCATATACTCGTAAAGTTGATGTGTATAGTTTTGGAATTGTGCTTTGGGAACTCACAACAGCTCTGCTTCCTTTTCAAGGAATGACTCCAGTACAAGCTGCTTTTGCAGTTGCTGAGAAGAATGAAAGGCCTCCACTGCCTGCAAGTTGTCAACCAGCACTTGCGCATCTAATAAAGCGATGTTGGTCAGCAAATCCTTCAAAGAGGCCAGATTTCAGCGATATTGTGTTTACTCTTGAGAGGTATGATGAATGTGTAAAGGAAGGTCTTCCTTTAACTCATCATTCAGGACTAGTCACCAAAAACTTCATTATTCAACGCTTAAAAGGTTGTGTTTCCATGAGTTCCTCCATACCTGTAAATGCTTAA 1152 0.3993 MNFARASMAGSWFNKLRLRRSKSNKPLPEPSSSSSKARLNSDADNMERKRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEERRTLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETVLRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVFTLERYDECVKEGLPLTHHSGLVTKNFIIQRLKGCVSMSSSIPVNA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05438 383 FunFam Serine/threonine-protein kinase isoform 1 76 168 - -
Trre16g05438 383 Gene3D Transferase(Phosphotransferase) domain 1 169 357 - -
Trre16g05438 383 ProSiteProfiles Protein kinase domain profile. 86 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05438 383 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 71 343 - -
Trre16g05438 383 SMART serkin_6 86 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05438 383 CDD STKc_MAP3K-like 93 340 - -
Trre16g05438 383 Gene3D Phosphorylase Kinase; domain 1 75 168 - -
Trre16g05438 383 MobiDBLite consensus disorder prediction 17 45 - -
Trre16g05438 383 SUPERFAMILY Protein kinase-like (PK-like) 64 338 IPR011009 -
Trre16g05438 383 FunFam serine/threonine-protein kinase HT1 169 362 - -
Trre16g05438 383 PRINTS Tyrosine kinase catalytic domain signature 248 258 IPR001245 GO:0004672|GO:0006468
Trre16g05438 383 PRINTS Tyrosine kinase catalytic domain signature 202 220 IPR001245 GO:0004672|GO:0006468
Trre16g05438 383 PRINTS Tyrosine kinase catalytic domain signature 311 333 IPR001245 GO:0004672|GO:0006468
Trre16g05438 383 PRINTS Tyrosine kinase catalytic domain signature 267 289 IPR001245 GO:0004672|GO:0006468
Trre16g05438 383 PRINTS Tyrosine kinase catalytic domain signature 164 177 IPR001245 GO:0004672|GO:0006468
Trre16g05438 383 Pfam Protein tyrosine and serine/threonine kinase 88 339 IPR001245 GO:0004672|GO:0006468
Trre16g05438 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Trre16g05438 383 MobiDBLite consensus disorder prediction 25 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05438 Trre-Chr16 57127862 57129936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05438 8 383 MAP Kinase Kinase Kinase AT1G62400 82.821 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre16g05438 PK_Tyr_Ser-Thr 5.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05438 - - gmx:100799437 699.508