Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05435 ATGAAACTCGACAACTCTAACTCCAACGGCCAGATGTCTTTCGCCGCCGACGATGCCGATGAGGCATTCGTTCCGCCGCTGAATTTCGCTATGGTTGATAACGGTATTTTCAGGTCCGGTTTTCCCGATTCTGCCAACTTCGGATTCTTGAAATCGCTTCGTCTCCGTTCCGTAATATGTTTGTGCCCTGAACCCTATCCTGAAACCACTGCGGAGTTTTTGAAGGCTAATGGAATAAGGCTTTATCAATTCGGTATCGATGGATGCAAGGAACCCTTTGTCAACATCCCAAATGATAAGATTCGGGAAGCTTTGAAAGTAGTACTCGATGTTAGGAATCACCCTGTACTGATTCATTGCAAACGAGGAAAGCACCGCACTGGTTGTCTTGTGGGATGCATAAGAAGATTGCAGAGATGGTGTCTATCATCTATTTTTGATGAGTACCAAAGGTTTGCAGGCGCCAAAGCCAGAGTGTCAGACCAGAGGTTCATCGAATTGTTTGATATTTCCAGTTTGAAGCACAACCCACTGTCCTTTTCATGCTCAAGGAAATCGGAATTGTAA 567 0.4515 MKLDNSNSNGQMSFAADDADEAFVPPLNFAMVDNGIFRSGFPDSANFGFLKSLRLRSVICLCPEPYPETTAEFLKANGIRLYQFGIDGCKEPFVNIPNDKIREALKVVLDVRNHPVLIHCKRGKHRTGCLVGCIRRLQRWCLSSIFDEYQRFAGAKARVSDQRFIELFDISSLKHNPLSFSCSRKSEL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05435 188 PRINTS Plant and fungal dual specificity phosphatase signature 96 110 IPR020428 GO:0016791
Trre16g05435 188 PRINTS Plant and fungal dual specificity phosphatase signature 79 93 IPR020428 GO:0016791
Trre16g05435 188 PRINTS Plant and fungal dual specificity phosphatase signature 23 40 IPR020428 GO:0016791
Trre16g05435 188 PRINTS Plant and fungal dual specificity phosphatase signature 60 73 IPR020428 GO:0016791
Trre16g05435 188 Pfam Tyrosine phosphatase family 24 178 IPR004861 -
Trre16g05435 188 ProSitePatterns Tyrosine specific protein phosphatases active site. 118 128 IPR016130 GO:0016311|GO:0016791
Trre16g05435 188 FunFam probable tyrosine-protein phosphatase At1g05000 22 172 - -
Trre16g05435 188 CDD PFA-DSP_Siw14 23 169 - -
Trre16g05435 188 ProSiteProfiles Dual specificity protein phosphatase domain profile. 28 182 IPR020422 GO:0006470|GO:0008138
Trre16g05435 188 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 23 170 IPR029021 -
Trre16g05435 188 PANTHER TYROSINE-PROTEIN PHOSPHATASE 22 177 - -
Trre16g05435 188 Gene3D Protein tyrosine phosphatase superfamily 22 172 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05435 Trre-Chr16 57111674 57114531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05435 21 185 Protein tyrosine phosphatase (PTP) family AT4G03960 76.364 3.42e-98 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05435 K18045 - gmx:100785520 336.265