Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05434 ATGAAGATGAAGTCTATTCTACTTCTACTTAGGGCGATAGTGATCCTCTATAGACTGATAACAAAAGTTCTCACAATCCTTGAGTATAGCGTACATTCTTCCATCTACGCGCACTCCTTCAACTTCAATCTCCGTGAGAGTATGGGAAAATCAGGGGGTAGAAGAAAGAAGGGTGGTGGTGCTGTTGTTGTTGACAACAATTCAGCTTCTGCACCAATTCCAAATGGTGGTGTTGAATTGGATTCGTCAATTTTTTTGAAAAAGGCACATGAAATGAAAGAAGAAGGGAATAGGAGATTTCAGAGTAAGGATTATGCTGGTGCTCTTGAACACTATGAGAATGCTCTTCGATTGACACCGAAAACTCATCCTGATAGGGCTGTTTTTCACAGCAATAGGGCTGCTTGTTTGATGCAAATGAAACCTATTGATTATGAATCTGTGATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCTCAATTTGTTCGGGCTCTTCTTCGTAGGGCTCGAGCTTTTGAGGCTGTTGGTAAGTATGAATTGGCTGTGCAAGATGTGCAGTTGTTGTTGGCTTCTGATCCTAATCATAAGGATGCTTTGGATATTGCTCAGAGGTTGAGGGCTGCTTTTGGGCATCGTCAGGAAGCTCAGCAGGATCTACACAGTCGACCTTCTCCTGCTGCACTTGGCGCTTCTGCTGTCCGTGGTGCTCCTATTGCTGGGTTAGGTCCGTGTTTGCCAGCACGGCCTGCGTCAAAGAAGGGAGCAAATTCTGCTGTTGGGTCGGTTGTTTCTCCTAATAGCAAGATAGACAAGTCTCAAAATGTTTTACTGCCAAATGAAAATGGTCCTGAGACCAAGACCCAGTTGCCAAAAGTTGTATTGAAGCCTTTTAACAATGGTCCTGCAGTTCAACCTAACTCGAAAAATGAGAACCAGAAGGATGTTCACAGGCAGAATTTGGAGGTTGCAATTCGGTGTAGACCATTGAAGCTTGTTTATGATCATGACATTAGGCTTGCCCAGATGCCGGTGAACTGCAGTTTCAGAGTACTGAGAGATGTAGTAAGCAAAAGATTTCCTTCGTCAAATTCAGTTCTGATCAAGTACAAGGATGGTGACGGTGATTTGGTTACTATTACATCTACTGATGAACTCAGATTGGCAGAGTCTTTTGTTGATAGCTATCTGCTGAAGGAACCCGAATCAGATAAAAGTGATTCAATTTCGGTACTGAGACTACATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTGTTGGAAGAAGAGGAAGAGAAACTTGTTGAGAATGAAGGGACCAAGGGAGATGAGAGTGGATCTCATTCTTCCCTGGGTGAATCTGTCCCTGAAGTTGCAGAAGTTGCTGAAGTTACTGAAGTTCCTGATACTGATGGTGATAAGATAATAAAGAAGGATGCTTCAAAGGAAAAGACGGGTGTCACAGGAGAAAATGAATGCAAAGAAGTGGAGATGGATGACTGGTTGTTTGAATTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGACCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCAGAGGCACTTGAAGAAACTGTAACAAGTGAGGAGGCTCAGGATCTATTTGACAAGGCTGCTTCAAAATTCCAGGAGGTGGCAGCTTTGGCATTCTTCAACTGGGGTAATGTTCACATGTGTGCTGCTAGGAAGCGGATTCCTTTAGATGAGTCAGCTGGGAAAGATGTAGTGGCGGAACAGCTTCAAGTGGCTTATGACTGGGTCAAAGAAAAGTATTCTTTGGCAAGAGAGAAATACGAGGAAGCACTTGTGATCAAACCAGATTTCTATGAGGGACTTTTGGCTCTGGGCCAGCAACAATTTGAAATGGCCAAGCTCCATTGGTCTTTTGCGATTGCTAAGAAGATAGATCTTACAAGCTGGGATCCAACGGAAACTCTTCAACTGTTTAGCAGTGCGGAGGAGAAGATGAAATCCGCAACAGATATGTGGGAGAAGTTGGAGGAACAGAGAGCAAAGGAGCTAAAGGACCCAAATGCAACCAAGAAAGAAGAAGTGTTGAGAAGAAGAAAGAAACAGGGAAGTGCTGCTGAAGGCGAGTCTTCTAGTGCTGGTGGTCAAGGTGAGATATCTCCCGAAGAAGCTGCTGAGCAAGCAGTGGTCATGAGATCACAGATTCATCTCTTCTGGGGCAATATGCTTTTTGAAAAATCCCAAGTTGAGTGCAAATTAGGAATGGATGGTTGGAAGAAAAATCTAGATGCTGCAACAGAGCGCTTTAAGCTTGCAGGAGCTTCCGAGGCAGATATTTCAATGGTTCTTAAGAATCATTGCTCAAATGGAGATGCAAAAGGTGATGATAAAAAAGTCCAAAGCCCACAACCCAACAAGACTGGTGAACTAGAGATCAATAAGGCCAATCAAGTATGA 2469 0.437 MKMKSILLLLRAIVILYRLITKVLTILEYSVHSSIYAHSFNFNLRESMGKSGGRRKKGGGAVVVDNNSASAPIPNGGVELDSSIFLKKAHEMKEEGNRRFQSKDYAGALEHYENALRLTPKTHPDRAVFHSNRAACLMQMKPIDYESVISECTLALQVQPQFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQRLRAAFGHRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPASKKGANSAVGSVVSPNSKIDKSQNVLLPNENGPETKTQLPKVVLKPFNNGPAVQPNSKNENQKDVHRQNLEVAIRCRPLKLVYDHDIRLAQMPVNCSFRVLRDVVSKRFPSSNSVLIKYKDGDGDLVTITSTDELRLAESFVDSYLLKEPESDKSDSISVLRLHIVEVSPEQEPPLLEEEEEKLVENEGTKGDESGSHSSLGESVPEVAEVAEVTEVPDTDGDKIIKKDASKEKTGVTGENECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLAREKYEEALVIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLTSWDPTETLQLFSSAEEKMKSATDMWEKLEEQRAKELKDPNATKKEEVLRRRKKQGSAAEGESSSAGGQGEISPEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMDGWKKNLDAATERFKLAGASEADISMVLKNHCSNGDAKGDDKKVQSPQPNKTGELEINKANQV 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05434 822 MobiDBLite consensus disorder prediction 807 822 - -
Trre16g05434 822 CDD PB1 330 416 - -
Trre16g05434 822 SMART PB1_new 327 419 IPR000270 GO:0005515
Trre16g05434 822 SMART tpr_5 127 162 IPR019734 GO:0005515
Trre16g05434 822 SMART tpr_5 163 196 IPR019734 GO:0005515
Trre16g05434 822 SMART tpr_5 89 122 IPR019734 GO:0005515
Trre16g05434 822 MobiDBLite consensus disorder prediction 258 287 - -
Trre16g05434 822 ProSiteProfiles PB1 domain profile. 327 419 IPR000270 GO:0005515
Trre16g05434 822 SUPERFAMILY TPR-like 86 220 IPR011990 GO:0005515
Trre16g05434 822 SUPERFAMILY CAD & PB1 domains 326 391 - -
Trre16g05434 822 ProSiteProfiles TPR repeat profile. 89 122 IPR019734 GO:0005515
Trre16g05434 822 MobiDBLite consensus disorder prediction 422 479 - -
Trre16g05434 822 MobiDBLite consensus disorder prediction 683 729 - -
Trre16g05434 822 MobiDBLite consensus disorder prediction 247 287 - -
Trre16g05434 822 Gene3D - 329 397 - -
Trre16g05434 822 PANTHER PROTEIN CLMP1 48 806 IPR044517 -
Trre16g05434 822 Pfam PB1 domain 329 418 IPR000270 GO:0005515
Trre16g05434 822 MobiDBLite consensus disorder prediction 683 709 - -
Trre16g05434 822 SUPERFAMILY TPR-like 543 639 IPR011990 GO:0005515
Trre16g05434 822 Coils Coil 663 683 - -
Trre16g05434 822 MobiDBLite consensus disorder prediction 790 822 - -
Trre16g05434 822 Gene3D Tetratricopeptide repeat domain 86 215 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05434 Trre-Chr16 57102871 57106383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05434 89 207 Calmodulin-binding Proteins AT3G25230 30.000 1.13e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05434 K26538 - gmx:100786963 1181.01