Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05432 ATGAGTCAACTCGGTCTCCTATTGCAGGAATCTCTACGTCCTCAAAGAGAAGCAAGAACAATTCTCGGTTTATTAACGGAACAAATGGACGGTTTAGATACAGGAACAACCAGAAGGCGTAGTCTTAAAGAACGGTTCAGATTCACCGGAATGGGTTGCTGTGGAGCCACCTGGGTTTTCCGTCCAATTATCAGGCACGAACAACAGCAACAGCAAGGAGATGAGAGGGAAAGGGAAAGAGAAGCTACGGAACAGGTAATTCAAGATCCGAACCCGGTTGAACCGGAATGTGTAAACCCGGAATCATCTGGTTCTGGAATGAATCTAGCGACGGCGTTGGCGGCGGAGCGTCAGATGAGAGGATCGGAGGAGGCGAGTGGAGGGACGACGTGGAGAGTTTCGTTGATGAAACTGTTGGAAGAAACGGAAGTTGAAAATGAAAGTAGTACAGCGGTGGTTGTAGAAGGAGGGAATGATACGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCATTCATACCGTGTGGACACACTTTCTGTAGAGTGTGTTCAAGGGAACTGTGGCTTAATCGAGGAAATTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTCGACATTTTCTGA 633 0.4787 MSQLGLLLQESLRPQREARTILGLLTEQMDGLDTGTTRRRSLKERFRFTGMGCCGATWVFRPIIRHEQQQQQGDEREREREATEQVIQDPNPVEPECVNPESSGSGMNLATALAAERQMRGSEEASGGTTWRVSLMKLLEETEVENESSTAVVVEGGNDTVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05432 210 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Trre16g05432 210 CDD RING-HC 162 199 - -
Trre16g05432 210 SMART ring_2 162 199 IPR001841 -
Trre16g05432 210 MobiDBLite consensus disorder prediction 68 85 - -
Trre16g05432 210 SUPERFAMILY RING/U-box 161 207 - -
Trre16g05432 210 PANTHER OS01G0917900 PROTEIN 7 210 - -
Trre16g05432 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 209 IPR013083 -
Trre16g05432 210 MobiDBLite consensus disorder prediction 67 105 - -
Trre16g05432 210 Pfam Zinc finger, C3HC4 type (RING finger) 159 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05432 Trre-Chr16 57094993 57095625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05432 21 210 C3H Transcription Factor Family AT4G22250 52.736 6.63e-58 180