Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05431 ATGAAAGCCTCAAAGCAACAAAGAGGATGCAAGGCCCTGTGTTGTAGCAGCAGCAGGTTTAGTGTTTCTTCTTCAGAGGAAGCAGAGAGTTCTTCTTCTGCCTCTAGTAGGTTCCCTTCTGTTTCTACACTAGCACATGCTATGGTGCAAGAGAGACTTGACCAAATGATTAGAGAAAAGCTTGAAGCTAGATATGTAGAGAGAAGAAGGGAGCAGAGAAGAAGATCAGAAGGAACTAAGTTTGTTGTAATGTTAGCTATGGAAAAATGTTCTTATGATCCTAGAGAGGATTTTAGGAAGTCGATGATGGAAATGATAACTGCAAATCGCCTTCAAGACACGAAAGATCTTCGTAGTTTATTGAACTATTATATTTCAATGAATTCAGAAGAATATCGTAGTCTTATACTTGAAATTTTTCATGAGGTTTGTACTAATTTGTTCTTATCATGGAGTAAATGCCAATGGTGA 471 0.3779 MKASKQQRGCKALCCSSSRFSVSSSEEAESSSSASSRFPSVSTLAHAMVQERLDQMIREKLEARYVERRREQRRRSEGTKFVVMLAMEKCSYDPREDFRKSMMEMITANRLQDTKDLRSLLNYYISMNSEEYRSLILEIFHEVCTNLFLSWSKCQW 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05431 156 NCBIfam uncharacterized plant-specific domain TIGR01568 86 148 IPR006458 -
Trre16g05431 156 ProSiteProfiles OVATE domain profile. 87 146 IPR006458 -
Trre16g05431 156 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 24 148 IPR038933 GO:0045892
Trre16g05431 156 Pfam Transcriptional repressor, ovate 91 148 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05431 Trre-Chr16 57088875 57089345 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Trre16g05431 Ovate 5.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05431 - - var:108330150 200.675