Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05421 ATGGGAGGTTTGAAGGAGGCTACAGTTGCACAAGAAGAACAGTTAAAGCAGGATACTAACATTAAGCTGGACAAAATTCCAAGATGCTCAAAAGATTTTGGAATTTCATATAAGAGAAGATTTCAAGAATATCATACACATCATACTGATACAAATGCAGAGGGGGGAAAAGATGTTATGGAATGTTTAAAGGAGACACCCAATCGCCCATCTAAGAAAGGATTTGAGCCAAAAAAGCTTGCTGTCAGAAACAAGAAATGGGAACTTGAAGATGATTTCTTGATTGACGAGTTTGAACAAGATGAAGAAATGTTTTTTCTTCTTAAGACGAAGAACAGGAGCAGAGCTGGTAGAATCGATAACACAACGGGTGTTCAACCAAATACCCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCTTTTGTGCCTTGTACTAAATGTTCAAAAATGTACTGTGTGCGATGTATCAACCAATGGTACCCTGATATGTCTATAGAAGAAGTTACTGAAAGTTGCCCGTTTTGCCTTAAAAATTGCAATTGCAATGTTTGCCTGCGCACGAAAGGAACAATTAAGACATCTAATTTGGCTGTCACCAATTACGAAAAAGCTCAGTATCTGCATTACATGATCAACTTACTCCTTCCATATCTGAAACAAATTTGTCAAGAACAAAGTCAAGAGGAAGACATTGAAGCTAAAATTCAAGGAAAATCTTCTTCTGAGATTGAGATACCACAAAATCTTTGTGGTGACAATGAACGAGTCTATTGTGATTATTGTGCTACTTCAATTATCGACCTTCATCGGAGCTGCCCCAACTGTTCTTACGAGCTTTGTCTTAAATGTTGCCAAGAAATACGCAATGGAAGCATTACTCCCCGGGCTGAGATGAAGTTCCAATATGTGAATAGGGGCTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATTTAGAGATTTCAGATGGTAATCTTGAGGTGCCTACCAAGTGGAATGCCAAGAGTGATGGAAGTGTTAGTTGTGTCCCAAAGGAGATGGGGGGTTGTGGTAGTTCTGTGTTGGAGCTGAGGCGCATCCTCCCCCACGGGTGGATGTCTGACTTGGAAGGAAAAGCTCACGATATGCTGAAAATTTGGGAAGTTGAACAAAAAACTTTTCAGCAGGAAGAAGCTGGATCCAACAACTCTATGAGAAAGGAATCCTTCACAAAAGGCACAAATGAAAGTAACATATACTGTTCAGAGTCAAGAGACGTTTTGAGAGAAAGGATGTTGCTCTTCCAAAAACATTGGACTAATGGTGAACCAATTATAGTTCGTGATGTTCTAAAACAGGGGACAGGTCTGAGCTGGGAGCCAATGGTTATGTGGCGAGCATTGTGTGATAATTTGGCTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCATGGCTAATTGTGAGGTTGCAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGAAGAACATATGGAAATCTCTGGCCAGAGATGCTCAAGTTAAAAGACTGGCCCCCTTCTGATAAATTCGAAGATCTTTTGCCCCGTCATTGTGATGAATTTATCCGTTTCTTGCCATTTCAACAGTACACTGATCCTCGGGCTGGAATACTTAACCTGGCTGTAAAGTTGCCAGCCCATGTCCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTACAGAAGAACTTGGTAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAACATTTTGACCCATACAGCAGAGGTATCATTAACTGATGAGCAACACGCTACTATTTCCAAACTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACACTGCGCTCCAGACTGGGCTGCTGTATGTCTAAATGGTCGATCTTGCGATGACAGCGAACGTATAGAAAATAAGGAAGTATTAGAATGCAAAGATACGGATAACTATCCTACTGTAATCAGTGGGGATATTCAAAATGATGTGTCTGAGAGGGACACTTTTCCTGCTACTTGTACAGAAAATGAAACAATGGTAACAAGTAGTGCTTTGTGGGACATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTCGAAAACACTCAAAAGAATTCAGGCATACTTATTGTTCACCGGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTTAGAAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATGTCCGTGAGTGTCTTCGTTTAACTGAAGAATTCCGTCAGCTTCCCAAGAACCACAAAGTTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGATCAAGCTGTGAAAGACCTAAAAGCTTTACTTGATTGTTCTTGA 2565 0.4027 MGGLKEATVAQEEQLKQDTNIKLDKIPRCSKDFGISYKRRFQEYHTHHTDTNAEGGKDVMECLKETPNRPSKKGFEPKKLAVRNKKWELEDDFLIDEFEQDEEMFFLLKTKNRSRAGRIDNTTGVQPNTRKCHQCMKKERTSFVPCTKCSKMYCVRCINQWYPDMSIEEVTESCPFCLKNCNCNVCLRTKGTIKTSNLAVTNYEKAQYLHYMINLLLPYLKQICQEQSQEEDIEAKIQGKSSSEIEIPQNLCGDNERVYCDYCATSIIDLHRSCPNCSYELCLKCCQEIRNGSITPRAEMKFQYVNRGYDYMHGGDPLPVSCDLEISDGNLEVPTKWNAKSDGSVSCVPKEMGGCGSSVLELRRILPHGWMSDLEGKAHDMLKIWEVEQKTFQQEEAGSNNSMRKESFTKGTNESNIYCSESRDVLRERMLLFQKHWTNGEPIIVRDVLKQGTGLSWEPMVMWRALCDNLASDISSKMSEVKAIDCMANCEVAINTRQFFKGYIEGRTYGNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRFLPFQQYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGITEELGRGDSVTKLHCDMSDAVNILTHTAEVSLTDEQHATISKLKEAHKAQDEREHCAPDWAAVCLNGRSCDDSERIENKEVLECKDTDNYPTVISGDIQNDVSERDTFPATCTENETMVTSSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVRECLRLTEEFRQLPKNHKVREDKLEIKKMIVYAVDQAVKDLKALLDCS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05421 854 ProSiteProfiles Zinc finger RING-type profile. 132 177 IPR001841 -
Trre16g05421 854 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 128 200 IPR018866 -
Trre16g05421 854 Gene3D Cupin 415 826 - -
Trre16g05421 854 SMART cupin_9 532 817 IPR003347 -
Trre16g05421 854 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 84 850 IPR045109 GO:0032454|GO:0033169
Trre16g05421 854 SUPERFAMILY Clavaminate synthase-like 418 853 - -
Trre16g05421 854 ProSiteProfiles JmjC domain profile. 551 817 IPR003347 -
Trre16g05421 854 Pfam JmjC domain, hydroxylase 692 800 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05421 Trre-Chr16 57004480 57008815 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre16g05421 JmjC 2.1e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05421 K15601 K21989 gmx:100797860 1228.77