Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05420 ATGGAAGTAGTAGTTCCTAGACAAGAACAGTCAAATCAACATACCGAGGATAATTTGAAGTTCTCGGGTTGCTCAAAAGCTTTTGGAAATTCAAAGAGAAAGGCTGAAGAAGAGTGTGGTGGTAATGAGAAACCAGAACAAGAACCAGAAGGGGAACAAAATACTATGGGAGGTTTGAAGGAGGCTACAGTTGCACAAGAAGAACAGTTAAAGCAGGATACTAACATTAAGCTGGACAAAATTCCAAGATGCTCAAAAGATTTTGGAATTTCATATAAGAGAAGATTTCAAGAATATCATACACATCATACTGATACAAATGCAGAGGGGGGAAAAGATGTTATGGAATGTTTAAAGGAGACACCCAATCGCCCATCTAAGAAAGGATTTGAGCCAAAAAAGCTTGCTGTCAGAAACAAGAAATGGGAACTTGAAGATGATTTCTTGATTGACGAGTTTGAACAAGATGAAGAAATGTTTTTTCTTCTTAAGACGAAGAACAGGAGCAGAGCTGGTAGAATCGATAACACAACGGGTGTTCAACCAAATACCCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCTTTTGTGCCTTGTACTAAATGTTCAAAAATGTACTGTGTGCGATGTATCAACCAATGGTACCCTGATATGTCTATAGAAGAAGTTACTGAAAGTTGCCCGTTTTGCCTTAAAAATTGCAATTGCAATGTTTGCCTGCGCACGAAAGGAACAATTAAGACATCTAATTTGGCTGTCACCAATTACGAAAAAGCTCAGTATCTGCATTACATGATCAACTTACTCCTTCCATATCTGAAACAAATTTGTCAAGAACAAAGTCAAGAGGAAGACATTGAAGCTAAAATTCAAGGAAAATCTTCTTCTGAGATTGAGATACCACAAAATCTTTGTGGTGACAATGAACGAGTCTATTGTGATTATTGTGCTACTTCAATTATCGACCTTCATCGGAGCTGCCCCAACTGTTCTTACGAGCTTTGTCTTAAATGTTGCCAAGAAATACGCAATGGAAGCATTACTCCCCGGGCTGAGATGAAGTTCCAATATGTGAATAGGGGCTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATTTAGAGATTTCAGATGGTAATCTTGAGGTGCCTACCAAGTGGAATGCCAAGAGTGATGGAAGTGTTAGTTGTGTCCCAAAGGAGATGGGGGGTTGTGGTAGTTCTGTGTTGGAGCTGAGGCGCATCCTCCCCCACGGGTGGATGTCTGACTTGGAAGGAAAAGCTCACGATATGCTGAAAATTTGGGAAGTTGAACAAAAAACTTTTCAGCAGGAAGAAGCTGGATCCAACAACTCTATGAGAAAGGAATCCTTCACAAAAGGCACAAATGAAAGTAACATATACTGTTCAGAGTCAAGAGACGTTTTGAGAGAAAGGATGTTGCTCTTCCAAAAACATTGGACTAATGGTGAACCAATTATAGTTCGTGATGTTCTAAAACAGGGGACAGGTCTGAGCTGGGAGCCAATGGTTATGTGGCGAGCATTGTGTGATAATTTGGCTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCATGGCTAATTGTGAGGTTGCAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGAAGAACATATGGAAATCTCTGGCCAGAGATGCTCAAGTTAAAAGACTGGCCCCCTTCTGATAAATTCGAAGATCTTTTGCCCCGTCATTGTGATGAATTTATCCGTTTCTTGCCATTTCAACAGTACACTGATCCTCGGGCTGGAATACTTAACCTGGCTGTAAAGTTGCCAGCCCATGTCCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTACAGAAGAACTTGGTAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAACATTTTGACCCATACAGCAGAGGTATCATTAACTGATGAGCAACACGCTACTATTTCCAAACTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACACTGCGCTCCAGACTGGGCTGCTGTATGTCTAAATGGTCGATCTTGCGATGACAGCGAACGTATAGAAAATAAGGAAGTATTAGAATGCAAAGATACGGATAACTATCCTACTGTAATCAGTGGGGATATTCAAAATGATGTGTCTGAGAGGGACACTTTTCCTGCTACTTGTACAGAAAATGAAACAATGGTAACAAGTAGTGCTTTGTGGGACATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTCGAAAACACTCAAAAGAATTCAGGCATACTTATTGTTCACCGGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTTAGAAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATGTCCGTGAGTGTCTTCGTTTAACTGAAGAATTCCGTCAGCTTCCCAAGAACCACAAAGTTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGATCAAGCTGTGAAAGACCTAAAAGCTTTACTTGATTGTTCTTGA 2730 0.4022 MEVVVPRQEQSNQHTEDNLKFSGCSKAFGNSKRKAEEECGGNEKPEQEPEGEQNTMGGLKEATVAQEEQLKQDTNIKLDKIPRCSKDFGISYKRRFQEYHTHHTDTNAEGGKDVMECLKETPNRPSKKGFEPKKLAVRNKKWELEDDFLIDEFEQDEEMFFLLKTKNRSRAGRIDNTTGVQPNTRKCHQCMKKERTSFVPCTKCSKMYCVRCINQWYPDMSIEEVTESCPFCLKNCNCNVCLRTKGTIKTSNLAVTNYEKAQYLHYMINLLLPYLKQICQEQSQEEDIEAKIQGKSSSEIEIPQNLCGDNERVYCDYCATSIIDLHRSCPNCSYELCLKCCQEIRNGSITPRAEMKFQYVNRGYDYMHGGDPLPVSCDLEISDGNLEVPTKWNAKSDGSVSCVPKEMGGCGSSVLELRRILPHGWMSDLEGKAHDMLKIWEVEQKTFQQEEAGSNNSMRKESFTKGTNESNIYCSESRDVLRERMLLFQKHWTNGEPIIVRDVLKQGTGLSWEPMVMWRALCDNLASDISSKMSEVKAIDCMANCEVAINTRQFFKGYIEGRTYGNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRFLPFQQYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGITEELGRGDSVTKLHCDMSDAVNILTHTAEVSLTDEQHATISKLKEAHKAQDEREHCAPDWAAVCLNGRSCDDSERIENKEVLECKDTDNYPTVISGDIQNDVSERDTFPATCTENETMVTSSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVRECLRLTEEFRQLPKNHKVREDKLEIKKMIVYAVDQAVKDLKALLDCS 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05420 909 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 183 255 IPR018866 -
Trre16g05420 909 ProSiteProfiles JmjC domain profile. 606 872 IPR003347 -
Trre16g05420 909 MobiDBLite consensus disorder prediction 1 63 - -
Trre16g05420 909 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g05420 909 SMART cupin_9 587 872 IPR003347 -
Trre16g05420 909 Pfam JmjC domain, hydroxylase 747 855 IPR003347 -
Trre16g05420 909 ProSiteProfiles Zinc finger RING-type profile. 187 232 IPR001841 -
Trre16g05420 909 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 30 905 IPR045109 GO:0032454|GO:0033169
Trre16g05420 909 Gene3D Cupin 470 881 - -
Trre16g05420 909 SUPERFAMILY Clavaminate synthase-like 473 908 - -
Trre16g05420 909 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05420 Trre-Chr16 57004480 57008980 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre16g05420 JmjC 2.3e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05420 K15601 K21989 gmx:100797860 1259.59