Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05417 ATGGCCATTTCAACTTCACTCCTCTCACTTTCATGCTTCTTACTACCAATTGTTTTAAGCATAATTAATGCCTATGCAAAAGAGAATTACTATAACACTAAGTCACCAATCCTCAACAAGATAGATTCATGTTGGCGCGCAAATTCGAATTGGGCGTCAAACCGAAAAGCCTTAGCTAATTGTGCTATTGGTTTTGGCAAAGATGCAATTGGAGGTAAATATGGTGCAATATATATAGTTACAGATTCTTCTGATGACCCTGAAAATCCAAAACAAGGTACACTTCGTTATGGCGCAATCCAAACGAAGCCGCTTTGGATAATTTTCAAAAGGGACATGGTTATTGCATTAAAGAATGAACTTATTATGAATAGTTACAAGACTATTGATGGTAGAGGAGTTAAAGTTGAGATTGGAAATGGACCTTGTATTACAATACAAGGTGTTAGTCATGTTATTATACATGGTATTAGGATTCATGATTGTAAACCAAGTAAGGCTGGACTTGTTAGAAGTACTCCTGATCATGTCGGTCGTCGACAAGGCTCGGATGGTGATGGTATTAGTATATTTGCTTCGTCGAATATTTGGATTGATCATTGTTTTTTGGCTAGTTGTAGTGATGGACTAATTGATATTATTCATGCCTCAACTGCTATTACCATTTCTAACAATTACTTTACTCAACATGACAAAGTTATGTTGCTAGGACACAATGATGATTACACAGCAGATAAAATAATGAAAGTAACGATAGTCTTCAATCGGTTCGCTAGTGGACTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCACACGTGGCCAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGAGGAAGTTCTAACCCAACTATTTTAAGTGAAGGGAATTTTTTTATAGCACCAAATGACAATAATGCAAAACAGATTACAAAGAGGGAAGCAAAGGCAAATTGGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCTCAAATGGTGCTTATTTTATACCATCTGGTTATGGAAGTTGTGCACCAAATTATACACCTTCTCAATCTTTTGTAGCTGTTCCAGCTTATATGGTTCCTGCTATAACTCTCAATGCAGGTCCATTGAGTTGTTATGTTGGGAGTGCATGTTAA 1158 0.3661 MAISTSLLSLSCFLLPIVLSIINAYAKENYYNTKSPILNKIDSCWRANSNWASNRKALANCAIGFGKDAIGGKYGAIYIVTDSSDDPENPKQGTLRYGAIQTKPLWIIFKRDMVIALKNELIMNSYKTIDGRGVKVEIGNGPCITIQGVSHVIIHGIRIHDCKPSKAGLVRSTPDHVGRRQGSDGDGISIFASSNIWIDHCFLASCSDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDDYTADKIMKVTIVFNRFASGLIERMPRVRFGYAHVANNKYDEWKMYAIGGSSNPTILSEGNFFIAPNDNNAKQITKREAKANWKSWKWRSSKDAFSNGAYFIPSGYGSCAPNYTPSQSFVAVPAYMVPAITLNAGPLSCYVGSAC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05417 385 PANTHER PECTATE LYASE 18-RELATED 37 383 IPR045032 GO:0030570
Trre16g05417 385 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Trre16g05417 385 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Trre16g05417 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Trre16g05417 385 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Trre16g05417 385 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Trre16g05417 385 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Trre16g05417 385 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Trre16g05417 385 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Trre16g05417 385 Gene3D - 38 378 IPR012334 -
Trre16g05417 385 Pfam Pectate lyase 120 303 IPR002022 -
Trre16g05417 385 SMART amb_all 112 309 IPR002022 -
Trre16g05417 385 SUPERFAMILY Pectin lyase-like 59 385 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05417 Trre-Chr16 56967729 56969237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05417 3 385 Polysaccharide Lyase AT1G11920 64.844 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05417 K01728 - gmx:100807483 632.484