Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05414 ATGTTAACATTTCCGATGAATCTCACTAATTGGTCTGATGTTAATGATAATGATAATGATGATGATCAACGCCGAATTAATCGTGTAATTGTGGATGAAGTTGATTTCTTCTCAGATAGAAATGATAAATCATCGTCTCCTGATGATGATGTTTCCATGAAGATCAATGATGAGATTTACGATCCTCATTGCAATCTCGCCGCTGACCATGTCAACACTGGTTTACAACTCCTGATTAGTAATACCGGAAGTGATCAATCAATGGCGGATGATTTATCTTCAATAAATGATGAAGATAAGCGTGCCAAGACTGCTCAGGTGGAGCAATTGCAAGAGGAGCTTCGATTTAAGAATGAAGAGAACCAAAAGCTGAAGGAAATGCTGAACACCATGAGAAGTAGCCACACAAACTTGCAAATGCGTTATGTCTCCTTGATGCAACAGAAACAGAACCAACGTACCACAGAACATGAACAGATTGGCCAAGGAAAAGCTGAGGAGAAAGAAGATAGTGTGATGGCTAGAAACTTCATGAGTGGCACAGCAGAAGTAGATGATCAGCAAGTATCAAACTCTTCTAATTCAGATGAAAAAACTCGATCGAGCACACCCCAGAACAATCAGAAATTAGAGACTGATCGAGACTCATCAGAACTAGTACAAGTTTGGGACCCAAGTAAGCGTCCCGCGTTAAACCCACCCAATGCCGTTGATCAATCAGCTGCTGAAGCCACTATGAGAAAAGCACGTGTCTCCGTCCGTGCCCGATCAGAAGCCCACATGATCAATGATGGATGCCAATGGCGAAAATATGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCATATTACAGATGCACGATGGCTATGGGTTGCCCTGTTCGCAAACAAGTTCAGCGTTGTGCGGAGGACAGAACAATTCTCATAACAACATATGAAGGGACACATAGCCATCCTCTGCCACCTGCCGCTGTGGCAATGGCATCGACCACCGCAGCAGCTGCTACCGTGTTACTGTCTGGTTCAATGTCAAGTGCTGATGGGGTGATCAATCCCAATATACTAGCCAGAATTCTTCCTAATTGCTCTTCTAGCATGGCCACACTCTCAGCATCAGCACCATTTCCTACTGTGACACTAGACCTTACACGCGACACTGCAGATAATAACCAAAATGCTCATTCCCAATTCCAGCTTGGACAACCTCAAAACTTTGGATCAGGACAATTACCACAGGTAATTGCACAAGCACTTTATAACACATCCAAATTCTCTGGCCTTCAATTGTCTCAGGATGTTGGGGGATCTTCCCAATTGAATCATACTCAACAAGCATCATCACTCAGTGCTGCCATCACTTCGGATCCAAACTTCACTGCAGCACTCGCCGCGGCTATCTCTTCCTTAATTGGCGCTGCTCCTCCCAACAATAACAACAAAAACAACAATCCCAATATCATCAACAGTTCTACCTACAATCAGTAG 1491 0.438 MLTFPMNLTNWSDVNDNDNDDDQRRINRVIVDEVDFFSDRNDKSSSPDDDVSMKINDEIYDPHCNLAADHVNTGLQLLISNTGSDQSMADDLSSINDEDKRAKTAQVEQLQEELRFKNEENQKLKEMLNTMRSSHTNLQMRYVSLMQQKQNQRTTEHEQIGQGKAEEKEDSVMARNFMSGTAEVDDQQVSNSSNSDEKTRSSTPQNNQKLETDRDSSELVQVWDPSKRPALNPPNAVDQSAAEATMRKARVSVRARSEAHMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAMGCPVRKQVQRCAEDRTILITTYEGTHSHPLPPAAVAMASTTAAAATVLLSGSMSSADGVINPNILARILPNCSSSMATLSASAPFPTVTLDLTRDTADNNQNAHSQFQLGQPQNFGSGQLPQVIAQALYNTSKFSGLQLSQDVGGSSQLNHTQQASSLSAAITSDPNFTAALAAAISSLIGAAPPNNNNKNNNPNIINSSTYNQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05414 496 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 79 484 IPR044810 GO:0003700
Trre16g05414 496 SUPERFAMILY WRKY DNA-binding domain 255 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05414 496 SMART WRKY_cls 262 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05414 496 Coils Coil 100 134 - -
Trre16g05414 496 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g05414 496 Gene3D WRKY domain 247 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05414 496 ProSiteProfiles WRKY domain profile. 257 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05414 496 MobiDBLite consensus disorder prediction 147 243 - -
Trre16g05414 496 MobiDBLite consensus disorder prediction 181 210 - -
Trre16g05414 496 MobiDBLite consensus disorder prediction 474 496 - -
Trre16g05414 496 FunFam probable WRKY transcription factor 31 247 324 - -
Trre16g05414 496 MobiDBLite consensus disorder prediction 159 173 - -
Trre16g05414 496 Pfam WRKY DNA -binding domain 263 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05414 Trre-Chr16 56956276 56958572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05414 2 484 WRKY Transcription Factor Family AT1G62300 49.228 2.02e-127 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g05414 WRKY 6.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05414 - - mtr:11439068 659.062