Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05385 ATGGGTTGTCACGGTAGTAAGGAAGAGAAGAAATCCGCTACAGAAGAGTATAGCCGCCACCGCCATCGATCATCATCCTCCACACCTGCTGCCGCTACTAATTTCCAGTATCAAATTGTTCAACCTTCTTCCTCTCACGTTCAAACTTCACCACCAAAACCAAAACCAGAATCACACTCAAACTCACATTCACAGCCTTCAACGGTGACTACAACAACAACATCAAATCCAAAACCCTCTTCCTCTTCCACTGCCACGTCACAGAATGTGAGAACAGTGCAGCAGAAGACAGACACAACCATATTAGGAAAACCCTTTGAAGATATTAAAAAATTCTATACTTTAGGTAAAGAACTAGGTAGAGGACAATTTGGGATTACTTATTTTTGCACTGAGAATTCAACTGGCTTAAATTATGCTTGTAAATCTATATTAAAGAGGAAGCTTGTTTCTAAAGCTGATAGAGAAGATATTAAGAGAGAGATTCAGATTTTGCAGCATTTATCTGGCCAACCAAATATTGTTGAATTCAAAGGTGCTTTTGAGGATAGGTTTTCTGTTCATCTTGTTATGGAACTTTGTGCTGGTGGAGAGTTATTTGATAAAATCATTGCTCAGGGTCATTATTCTGAGAGAGCTGCTGCTTCTATTTGTAGAGATGTTGTTAATGTTGTGCATATTTGTCATTTCATGGGTGTATTGCATCGCGATTTAAAGCCCGAGAATTTCTTGCTTTCTAGTAAGGATGCAGGAGCTGCACTCAAAGCTACTGATTTTGGACTTTCTGTCTTCATTGAAGAGGGAAAGGTTTACCGTGATATGGTAGGAAGTGCTTACTATGTTGCTCCTGAGGTACTACGTCGTAGTTATGGAAAGGAAATAGACATTTGGAGTGCAGGCATCATATTGTATATTCTCCTTAGTGGTGTACCACCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAACTTGACTTTGTTAGTGAACCATGGCCATCAATATCAGACAGTGCTAAAGATCTAGTCAGAAAGATGCTGACACAGGATCCAAAGAAGAGGATTACTTCTACCCAAGTCCTTGAACACCCATGGATGAGAGAAGGTGGAGAGGCTTCTGATAAACCAATTGATAGTGCAGTTCTATCTAGAATGAAACAATTCAGGGCAATGAATAAGTTCAAGAAACTTGCATTAAAGGTTATGGCTGAAAGTCTATCAGAAGAAGAGATTAAAGGTCTCAAGGCAATGTTTGCAAATATGGACACTGATGGTAGTGGCACCATCACCTATGAAGAACTGAAGTCAGGCCTAGCACGAATTGGATCACGATTGTCTGAGCCTGAAGTGAAGCAACTTATGGAAGCTGCTGATGTTGATGGAAATGGCTCAATCGACTATCTTGAATTCATATCGGCTACAATGCATAGGCACAGACTTGAACGAGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAAGACAATAGCGGGCATATCACTAGAGAAGAATTGGAGACTGCCATGACAAAGCATGGAATGGGTGATGAAGCAACAATAAAGGAAATTATTTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGCGGAATGCCACACCAGGCACAACTATTTTAA 1686 0.3986 MGCHGSKEEKKSATEEYSRHRHRSSSSTPAAATNFQYQIVQPSSSHVQTSPPKPKPESHSNSHSQPSTVTTTTTSNPKPSSSSTATSQNVRTVQQKTDTTILGKPFEDIKKFYTLGKELGRGQFGITYFCTENSTGLNYACKSILKRKLVSKADREDIKREIQILQHLSGQPNIVEFKGAFEDRFSVHLVMELCAGGELFDKIIAQGHYSERAAASICRDVVNVVHICHFMGVLHRDLKPENFLLSSKDAGAALKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGELDFVSEPWPSISDSAKDLVRKMLTQDPKKRITSTQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKFKKLALKVMAESLSEEEIKGLKAMFANMDTDGSGTITYEELKSGLARIGSRLSEPEVKQLMEAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGHITREELETAMTKHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPHQAQLF 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05385 561 FunFam calcium-dependent protein kinase 1 199 378 - -
Trre16g05385 561 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Trre16g05385 561 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Trre16g05385 561 Gene3D Transferase(Phosphotransferase) domain 1 199 378 - -
Trre16g05385 561 FunFam Calcium-dependent protein kinase 1 115 198 - -
Trre16g05385 561 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g05385 561 SMART serkin_6 113 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05385 561 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Trre16g05385 561 MobiDBLite consensus disorder prediction 24 96 - -
Trre16g05385 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 105 546 - -
Trre16g05385 561 MobiDBLite consensus disorder prediction 1 96 - -
Trre16g05385 561 SMART efh_1 490 518 IPR002048 GO:0005509
Trre16g05385 561 SMART efh_1 525 553 IPR002048 GO:0005509
Trre16g05385 561 SMART efh_1 418 446 IPR002048 GO:0005509
Trre16g05385 561 SMART efh_1 454 482 IPR002048 GO:0005509
Trre16g05385 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Trre16g05385 561 Gene3D - 379 553 - -
Trre16g05385 561 Gene3D Phosphorylase Kinase; domain 1 115 198 - -
Trre16g05385 561 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Trre16g05385 561 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Trre16g05385 561 ProSitePatterns EF-hand calcium-binding domain. 534 546 IPR018247 -
Trre16g05385 561 ProSiteProfiles EF-hand calcium-binding domain profile. 486 521 IPR002048 GO:0005509
Trre16g05385 561 CDD EFh 493 551 IPR002048 GO:0005509
Trre16g05385 561 SUPERFAMILY Protein kinase-like (PK-like) 112 379 IPR011009 -
Trre16g05385 561 FunFam Calcium-dependent protein kinase 1 379 554 - -
Trre16g05385 561 Pfam Protein kinase domain 113 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05385 561 CDD STKc_CAMK 112 370 - -
Trre16g05385 561 ProSitePatterns Protein kinases ATP-binding region signature. 119 146 IPR017441 GO:0005524
Trre16g05385 561 SUPERFAMILY EF-hand 411 550 IPR011992 -
Trre16g05385 561 ProSiteProfiles EF-hand calcium-binding domain profile. 522 556 IPR002048 GO:0005509
Trre16g05385 561 Pfam EF-hand domain pair 489 551 IPR002048 GO:0005509
Trre16g05385 561 Pfam EF-hand domain pair 419 479 IPR002048 GO:0005509
Trre16g05385 561 ProSiteProfiles Protein kinase domain profile. 113 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05385 Trre-Chr16 56752110 56756503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05385 63 553 EF-hand Containing Proteins AT4G04720 79.837 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre16g05385 Pkinase 4.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05385 K13412 - gmx:100816859 884.404