Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05375 ATGATGCAACCAGGAGGACCTGGCATGGCTCCACACGCCATCGCTCAACAATACCAACAGCAACAACAACAACAACAACCCTACATGATGATGCCTCCTCAACCTCAACCTCAACCTCAGACCCAACCTCCTCAGATGTGGGCCCCTAATGCTCAACCTCCTCATCAATCGGCTCCTCCTCAACAACAGCCTCAACCTGCCAGCGCCGACGAGGTCCGTACTCTCTGGATCGGCGATTTGCAATACTGGATGGACGAGAACTATCTTTATCAATGTTTCTCTCACACCGGCGAGGTTGGATCTGTTAAAGTTATTCGTAACAAGCAGACTAATCAATCTGAAGGTTATGGGTTTCTTGAGTTTACTAGTCGTGCTGGTGCGGAGAGAGTTCTTCAAAACTATAATGGCACCATTATGCCGAATGGTGGCCAGAATTTCAGATTGAACTGGGCAACTTTTAGTTCTGGTGAGAAGCGTCATGACGATTCTCCAGATTATACTATATTTGTTGGAGACTTGGCTGCTGATGTTACTGATTATCATCTGACTGAAGTATTTAGAACTCGTTATAACTCAGTTAAGGGTGCTAAAGTTGTAATTGATAGGACTACTGGAAGGACAAAGGGTTATGGTTTTGTTAGGTTTGCAGATGAGGGTGAACAAATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCCACAAGACCCATGCGTATTGGACCGGCCTCTAACAAAAACCTTACCACACAGTCGTCAAAAGCTTCATATCAGAATCCTCAAGGGGGGGCACAGAACGAGAACGATCCAAATAATACAACCATTTTTGTTGGCAATTTGGATCCTAATGTCACGGATGATCATTTGAGACAAGTTTTTGTGCAGTATGGAGAACTTGTTCATGTTAAGATTCCATCAGGCAAGAGATGCGGGTTTGTCCAATTTGCTGACAGGAGCTCTGCAGAGGAGGCACTGCGTGTTTTAAACGGTACACTTCTAGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGCCCAGCAAACAAACAGACTCAACAGGATCCAAACCAGTGGAATGGTAGCAGTGGATACTTTGGATATCCTCAGGGTTATGAAAATTATGCTTATGCTCCTGCATCTGGACAGGACCCCAATATGTATGGCAATTATCCAGCGGGGTATGCAAATTACCAACCCCCTCAGCAACAACAGCAAATAGGATACAGTTAA 1230 0.452 MMQPGGPGMAPHAIAQQYQQQQQQQQPYMMMPPQPQPQPQTQPPQMWAPNAQPPHQSAPPQQQPQPASADEVRTLWIGDLQYWMDENYLYQCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFTSRAGAERVLQNYNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPASNKNLTTQSSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFVQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPASGQDPNMYGNYPAGYANYQPPQQQQQIGYS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05375 409 SMART rrm1_1 74 149 IPR000504 GO:0003723
Trre16g05375 409 SMART rrm1_1 167 241 IPR000504 GO:0003723
Trre16g05375 409 SMART rrm1_1 274 341 IPR000504 GO:0003723
Trre16g05375 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 345 IPR000504 GO:0003723
Trre16g05375 409 MobiDBLite consensus disorder prediction 395 409 - -
Trre16g05375 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 245 IPR000504 GO:0003723
Trre16g05375 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 62 349 - -
Trre16g05375 409 MobiDBLite consensus disorder prediction 30 61 - -
Trre16g05375 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 140 IPR000504 GO:0003723
Trre16g05375 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 231 IPR000504 GO:0003723
Trre16g05375 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 338 IPR000504 GO:0003723
Trre16g05375 409 Gene3D - 252 354 IPR012677 -
Trre16g05375 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 153 IPR000504 GO:0003723
Trre16g05375 409 FunFam Polyadenylate-binding protein RBP45 6 157 - -
Trre16g05375 409 SUPERFAMILY RNA-binding domain, RBD 35 155 IPR035979 GO:0003676
Trre16g05375 409 CDD RRM1_SECp43_like 74 154 - -
Trre16g05375 409 CDD RRM2_SECp43_like 165 244 - -
Trre16g05375 409 MobiDBLite consensus disorder prediction 1 70 - -
Trre16g05375 409 Gene3D - 72 152 IPR012677 -
Trre16g05375 409 FunFam Polyadenylate-binding protein RBP45C 158 249 - -
Trre16g05375 409 Gene3D - 153 251 IPR012677 -
Trre16g05375 409 MobiDBLite consensus disorder prediction 387 409 - -
Trre16g05375 409 MobiDBLite consensus disorder prediction 241 273 - -
Trre16g05375 409 FunFam Polyadenylate-binding protein RBP45C 250 355 - -
Trre16g05375 409 SUPERFAMILY RNA-binding domain, RBD 259 370 IPR035979 GO:0003676
Trre16g05375 409 MobiDBLite consensus disorder prediction 14 29 - -
Trre16g05375 409 SUPERFAMILY RNA-binding domain, RBD 160 261 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05375 Trre-Chr16 56606994 56610616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05375 72 352 Eukaryotic Initiation Factors Gene Family AT2G23350 27.622 6.91e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05375 - - gmx:100796848 602.438