Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05360 ATGGAGAGATCTTACCATGCCATCAAGGATATCAACAAGAAAAAAGAAGTATGGAAACTTGCAGTCATTGTGGATGAACTTTGGAGTGCTTTTAAAGGAGATAAGGAAGACACACTTGAAATGCTTTTAAGGGATATTAATGGAGATACTATTCACGCTACTATCAACACAAATGACATTTCTGCTTGGAAAGACAAAATATCACAAGGAAAAACCTACTACATGAATAATTTTAGAGTTGGTGTCAATGATCATAAATTTAAAATGTCCCAGCACGCGTGTAAGTTAACATTTGTAGCAGCAACAAGGGTTCACGAGCTTGACATACCTGCAATGCCTACCACTTTGTTCATGTTCAAAGACTTTGGCGAAATACTCTCAGGGAATTATGAACCGGACGTCTTAGTTGATGCTATTGGTGTTGTGCAAGAAATTGGGAAGTGTGTCTCTGCTTCTTCTACAAAGAAAGGAAATGTTGCTTTCAAGATGATGAATAAAAGTGAACACCTGCTTGATTGCACATTGTGGGATGCTTTGGCTGCTGAGTTTCTTGAGAGATACAACAACCGAACTGATTTTGGTCCATTTGTTCTCATTATCAATCATGCAAGGGTTAAGGAAGCACAAGGGATTTATCCTTTACAACTGTCTAATGTTTGGAACGGAACTAAACTGTTATTTGATGAAAACATTCCTGAAATCAAAGAATTCAAATCTAGTTTTCCCAAGAATGCTAATTATTCAACACAAAGTGCTGCAATATCTAATTTTACTCAAGGATTCACTCAAGGTTCTGTGGGATCTCAGTACAATTCTGATGAACTTTTCATGAGCAGGGCAAAGGTTTTAAGTTTGGCTGAGATGAAGTTGTTGAAGACGGATACATTTTGTGTGACTGTTCTGGAGACTTCACACGTTCGTACAAATGGTGGAGGTTGGTTTTTTCGCGGATGTCGTGAATGTAACAAAAAGGTTGACGGAACTGAGGCACCGTTTGCATGTATTGATGGGCATAAAACAGATGATCCCCTTATTAAGTATAAACTAGATGTAGAAGTCTGCGATGGGGATGAAGAGGCAAAATTCGTATTTTGGGATAGTTCACTTGATGAGTTGATCGGAATGCCAGCATCTGAATTACTAAAGAAACAACATGAGCGTGGCATCTTTGAGGACACAGACTACCCTGATGAATTTGAAGATATTATGCATCGTACTTTTGCTTTTAGAGTTAAATGGCAATGGTCATGGGGACATGGTTCTGTCATACAGTGTAAGGATGACAAAGATTTGGTTGCCAAAATCCAAGAACAATTGCCAAATGCTGAGACCAAATGCACTGAAGCTGTACCAGTCACTCCTACTGATCAAAATACTTTGGCAACCCCTGAAGCACAGTCCAAACAGGTTTTTACAACTGAAGATATTGCAAAGTTCTCACTTTTAGACGATAACATTTTGTCTACGCCAATATGTTCAGCATCTGCTGAGACTGATCCAGCTGTTTCTTCTCAAAACACACCTGCTAAGAGATTTGTCAAACAGAAAACAACTGATCATGTCCTTGATGGCCAACTATCATCGTCTAGAGGTCGAAAGATCATCAAAAAAGAGAAATAA 1620 0.3864 MERSYHAIKDINKKKEVWKLAVIVDELWSAFKGDKEDTLEMLLRDINGDTIHATINTNDISAWKDKISQGKTYYMNNFRVGVNDHKFKMSQHACKLTFVAATRVHELDIPAMPTTLFMFKDFGEILSGNYEPDVLVDAIGVVQEIGKCVSASSTKKGNVAFKMMNKSEHLLDCTLWDALAAEFLERYNNRTDFGPFVLIINHARVKEAQGIYPLQLSNVWNGTKLLFDENIPEIKEFKSSFPKNANYSTQSAAISNFTQGFTQGSVGSQYNSDELFMSRAKVLSLAEMKLLKTDTFCVTVLETSHVRTNGGGWFFRGCRECNKKVDGTEAPFACIDGHKTDDPLIKYKLDVEVCDGDEEAKFVFWDSSLDELIGMPASELLKKQHERGIFEDTDYPDEFEDIMHRTFAFRVKWQWSWGHGSVIQCKDDKDLVAKIQEQLPNAETKCTEAVPVTPTDQNTLATPEAQSKQVFTTEDIAKFSLLDDNILSTPICSASAETDPAVSSQNTPAKRFVKQKTTDHVLDGQLSSSRGRKIIKKEK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05360 539 Gene3D - 262 436 IPR012340 -
Trre16g05360 539 Pfam Replication factor-A C terminal domain 313 413 IPR013955 -
Trre16g05360 539 ProSiteProfiles PAS repeat profile. 357 402 IPR000014 -
Trre16g05360 539 SUPERFAMILY Nucleic acid-binding proteins 303 415 IPR012340 -
Trre16g05360 539 Gene3D - 3 106 IPR012340 -
Trre16g05360 539 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Trre16g05360 539 CDD RPA1_DBD_A_like 19 104 - -
Trre16g05360 539 Gene3D - 111 252 IPR012340 -
Trre16g05360 539 MobiDBLite consensus disorder prediction 495 512 - -
Trre16g05360 539 MobiDBLite consensus disorder prediction 495 539 - -
Trre16g05360 539 SUPERFAMILY Nucleic acid-binding proteins 3 107 IPR012340 -
Trre16g05360 539 CDD RPA1_DBD_B_like 137 242 - -
Trre16g05360 539 SUPERFAMILY Nucleic acid-binding proteins 119 245 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05360 Trre-Chr16 56527421 56530411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05360 1 411 Core DNA Replication Machinery Family AT5G08020 24.057 1.66e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05360 - - tpra:123884216 610.142