Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05359 ATGGAGAGATCTTACCATGCCATCAAGGATATCAACAAGAAAAAAGAAGTATGGAAACTTGCAGTCATTGTGGATGAACTTTGGAGTGCTTTTAAAGGAGATAAGGAAGACACACTTGAAATGCTTTTAAGGGATATTAATGGAGATACTATTCACGCTACTATCAACACAAATGACATTTCTGCTTGGAAAGACAAAATATCACAAGGAAAAACCTACTACATGAATAATTTTAGAGTTGGTGTCAATGATCATAAATTTAAAATGTCCCAGCACGCGTGTAAGTTAACATTTGTAGCAGCAACAAGGGTTCACGAGCTTGACATACCTGCAATGCCTACCACTTTGTTCATGTTCAAAGACTTTGGCGAAATACTCTCAGGGAATTATGAACCGGACGTCTTAGTTGATGCTATTGGTGTTGTGCAAGAAATTGGGAAGTGTGTCTCTGCTTCTTCTACAAAGAAAGGAAATGTTGCTTTCAAGATGATGAATAAAAGTGAACACCTGCTTGATTGCACATTGTGGGATGCTTTGGCTGCTGAGTTTCTTGAGAGATACAACAACCGAACTGATTTTGGTCCATTTGTTCTCATTATCAATCATGCAAGGGTTAAGGAAGCACAAGGGATTTATCCTTTACAACTGTCTAATGTTTGGAACGGAACTAAACTGTTATTTGATGAAAACATTCCTGAAATCAAAGAATTCAAATCTAGTTTTCCCAAGAATGCTAATTATTCAACACAAAGTGCTGCAATATCTAATTTTACTCAAGGATTCACTCAAGGTTCTGTGGGATCTCAGTACAATTCTGATGAACTTTTCATGAGCAGGGCAAAGGTTTTAAGTTTGGCTGAGATGAAGTTGTTGAAGACGGATACATTTTGTGTGACTGTTCTGGAGACTTCACACGTTCGTACAAATGGTGGAGGTTGGTTTTTTCGCGGATGTCGTGAATGTAACAAAAAGGTTGACGGAACTGAGGCACCGTTTGCATGTATTGATGGGCATAAAACAGATGATCCCCTTATTAAGTATAAACTAGATGTAGAAGTCTGCGATGGGGATGAAGAGGCAAAATTCGTATTTTGGGATAGTTCACTTGATGAGTTGATCGGAATGCCAGCATCTGAATTACTAAAGAAACAACATGAGCGTGGCATCTTTGAGGACACAGACTACCCTGATGAATTTGAAGATATTATGCATCGTACTTTTGCTTTTAGAGTTAAATGGCAATGGTCATGGGGACATGGTTCTGTCATACAGTGTAAGGATGACAAAGATTTGGTTGCCAAAATCCAAGAACAATTGCCAAATGCTGAGACCAAATGCACTGAAGCTGTACCAGTCACTCCTACTGATCAAAATACTTTGGCAACCCCTGAAGCACAGTCCAAACAGGTTTTTACAACTGAAGATATTGCAAAGTTCTCACTTTTAGACGATAACATTTTGTCTACGCCAAATTTGTCTGCCTCCTCTGCTGAGACTGATCCAGATACCTCTATGCAAAAGCCACCTGCTAAGAGATTTGTCAAAAAAAAAACAACTGATCATGTTGCTGAACCAGTCATGAAAACTGATAAAACTACATTGACAATACCTAAACCAAAGGTCAAACAGGTGTTTACAACTGAAGATATTGCCAAATTCTCACTAGGTGATGAGACCAGTTTGTCTCCTCCAATATGTTCAGCATCTGCTGAGACTGATCCAGCTGTTTCTTCTCAAAACACACCTGCTAAGAGATTTGTCAAACAGAAAACAACTGATCATGTCCTTGATGGCCAACTATCATCGTCTAGAGGTCGAAAGATCATCAAAAAAGAGAAATAA 1842 0.3871 MERSYHAIKDINKKKEVWKLAVIVDELWSAFKGDKEDTLEMLLRDINGDTIHATINTNDISAWKDKISQGKTYYMNNFRVGVNDHKFKMSQHACKLTFVAATRVHELDIPAMPTTLFMFKDFGEILSGNYEPDVLVDAIGVVQEIGKCVSASSTKKGNVAFKMMNKSEHLLDCTLWDALAAEFLERYNNRTDFGPFVLIINHARVKEAQGIYPLQLSNVWNGTKLLFDENIPEIKEFKSSFPKNANYSTQSAAISNFTQGFTQGSVGSQYNSDELFMSRAKVLSLAEMKLLKTDTFCVTVLETSHVRTNGGGWFFRGCRECNKKVDGTEAPFACIDGHKTDDPLIKYKLDVEVCDGDEEAKFVFWDSSLDELIGMPASELLKKQHERGIFEDTDYPDEFEDIMHRTFAFRVKWQWSWGHGSVIQCKDDKDLVAKIQEQLPNAETKCTEAVPVTPTDQNTLATPEAQSKQVFTTEDIAKFSLLDDNILSTPNLSASSAETDPDTSMQKPPAKRFVKKKTTDHVAEPVMKTDKTTLTIPKPKVKQVFTTEDIAKFSLGDETSLSPPICSASAETDPAVSSQNTPAKRFVKQKTTDHVLDGQLSSSRGRKIIKKEK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05359 613 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Trre16g05359 613 MobiDBLite consensus disorder prediction 490 520 - -
Trre16g05359 613 ProSiteProfiles PAS repeat profile. 357 402 IPR000014 -
Trre16g05359 613 Gene3D - 3 106 IPR012340 -
Trre16g05359 613 MobiDBLite consensus disorder prediction 560 586 - -
Trre16g05359 613 SUPERFAMILY Nucleic acid-binding proteins 119 245 IPR012340 -
Trre16g05359 613 CDD RPA1_DBD_A_like 19 104 - -
Trre16g05359 613 SUPERFAMILY Nucleic acid-binding proteins 3 107 IPR012340 -
Trre16g05359 613 MobiDBLite consensus disorder prediction 556 613 - -
Trre16g05359 613 Pfam Replication factor-A C terminal domain 313 413 IPR013955 -
Trre16g05359 613 Gene3D - 262 436 IPR012340 -
Trre16g05359 613 Gene3D - 108 252 IPR012340 -
Trre16g05359 613 CDD RPA1_DBD_B_like 137 242 - -
Trre16g05359 613 SUPERFAMILY Nucleic acid-binding proteins 303 415 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05359 Trre-Chr16 56527421 56530411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05359 1 411 Core DNA Replication Machinery Family AT5G08020 24.057 3.71e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05359 - - tpra:123884216 589.341