Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05354 ATGATATCACAAGTCAACTACACATCTTCATTACCCTTTACCACCTTTTCTTCCTCAAGGCCTAAACTAATTTCCACAATACCCACTTTTCATAATATACAAAACAACACAAATAAACTTTCTTTGTCTTCCCTCAAACCTCTTTACATATCATCCACTGAAAACTTCAAATTCTCAACAACAAAACTCAGAAAGAGTGTAACAGAATGTCATGCTTATGAAGAAGCAGATAGGTCACAGCCATTGGAGATTAACATTGCTGAACAGGCAGCTAAGTTCAAAATTGGTTTGTATTTTGGTACTTGGTGGGCTTTGAATGTTGTGTTCAATATTTATAACAAGAAGGTTTTGAATGCTTTTCCTTATCCATGGCTTACTTCAACTTTGTCCCTTGCTGCTGGTTCTCTCATCATGTTAGTCTCATGGGCTACAAGGGTTGCTGAGGCTCCTAAGGTTAATTTGGACTTTTGGAAGGCCTTGTTTCCTGTTGCAGTGGCACATACAATTGGGCATGTTGCAGCTACTGTGAGTATGTCCAAAGTTGCAGTTTCATTTACACATATCATCAAAAGTGGAGAGCCTGCTTTCAGTGTTCTGGTATCAAAGTTCTTGCTTGGGGAAGCATTCCCTTTGCAGGTTTACCTTTCACTAATACCAATCATTGGAGGTTGTGCACTTGCTGCTGTCACTGAGCTTAATTTCAATATGATTGGGTTTATGGGGGCTATGATATCGAATGTAGCCTTTGTGTTTAGGAATATATTCTCAAAGAAGGGAATGAAAGGGATGTCTGTTAGTGGAATGAACTACTATGCTTGCCTCTCCATATTATCTCTATTGCTTCTCACCCCTTTTGCTATTGCTGTCGAAGGCCCAAAGATGTGGGCTGCTGGCTGGCAAACAGCAGTGTCTCAGATTGGTCCCAATTTTGTCTGGTGGGTAGCTGCACAAAGTGTGTTCTATCACTTGTACAATCAAGTCTCTTATATGTCTCTTGATCAGATTTCTCCATTAACATTTAGCATAGGGAACACAATGAAGAGAATCTCGGTTATTGTCTCGTCGATTATTATCTTCCACACGCCAATTCAGCCAAACAATGCCCTTGGTGCTGCCATTGCAATCCTTGGCACCTTCCTCTATTCACAGGCTAAACAGTAA 1161 0.404 MISQVNYTSSLPFTTFSSSRPKLISTIPTFHNIQNNTNKLSLSSLKPLYISSTENFKFSTTKLRKSVTECHAYEEADRSQPLEINIAEQAAKFKIGLYFGTWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMLVSWATRVAEAPKVNLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSKFLLGEAFPLQVYLSLIPIIGGCALAAVTELNFNMIGFMGAMISNVAFVFRNIFSKKGMKGMSVSGMNYYACLSILSLLLLTPFAIAVEGPKMWAAGWQTAVSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPIQPNNALGAAIAILGTFLYSQAKQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05354 386 PANTHER SOLUTE CARRIER FAMILY 35 94 385 - -
Trre16g05354 386 Pfam Triose-phosphate Transporter family 94 382 IPR004853 -
Trre16g05354 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 135 229 - -
Trre16g05354 386 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 94 385 IPR004696 GO:0016020|GO:0022857|GO:0055085
Trre16g05354 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 285 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05354 Trre-Chr16 56492659 56495120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05354 21 386 Antiporters AT1G61800 78.649 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05354 K15283 K05350 gmx:100804205 594.349