Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05352 ATGGACACTCACAGTCTTCTTCTTCCTCTTCGTCTTCTTTCATCTCAAAATCCAACCTCTTCTTCTTGCATCCCTCGTTCACATAACAACAACAACAACCATTTTCTAAAACTATTCTCCACTACTCACATTAACCGTTTCTCCAACTTCGCAACCATTGCAAATTCTTCTCCCACAATTCCTACAACCGATCACACACCCACAACTCCCACTCTCAGAGATTTATGTCATGCTCACGTTCCCGACCAATTCCTGCAAAGGATGGAAGAGGTTGGATATGTCATGCCTACAGAAGTCCAGAAGCAAGCATTGCCTCATCTTTTTTCCGGCCGTGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTGCATACTTGCTTTTGATCTATTCTATCATCAACACTAAAAAATCTTCTTTTCAAGCACTAGTTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCCAAGGTAGCTAGGATACTGGCGGCAAAGCCATCCGGAGTTGAAGGGGAGCAGAGATCGTGTACCATCATGGCTCTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCAGAGCCTCCAGCAATAGTGGTTGCAACAGTTGAGAGTTTGTGCCAAATGCTTGAAAGACAACTTTTTTCGCTTAGAACCTTGCAGGTGTTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAATTCCCTCCGGAAGATTTTGACCTCATATTCGTCTTGTAATAACCGTCAGACAGTTTTTGCCAGTGCATCTATACCACAGCACAATCGATTTCTTAACGAAGCTATGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCATGTTAGTCCAGTGGAGCCCATGCCATCTCGCATATATCATAGATTTATAGTATGTGATACAAAGAGAAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCTCCCGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCGAAAAATGCTGGAAATGCTCCATCCACGTCCCTTGTGATTGACTTTCTAAAGACATCATATCACGGTTCTTTAGACATCCTCCTCCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGGAAAGGTGGCGGCTATCTTCTAGTGGCAACGGAAGTAGCTGCTAGAGGAGTCGACTTTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAACTGCCATAGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGACATTAACTGTTCTGTCACCAGCATTATAGTTTCTGAGGAGCGGTTTGTTCTGAAGAGATATGAAAATGAGTTGATGTTTGTGTGTGAAGAGCTTATTCCATAA 1419 0.4278 MDTHSLLLPLRLLSSQNPTSSSCIPRSHNNNNNHFLKLFSTTHINRFSNFATIANSSPTIPTTDHTPTTPTLRDLCHAHVPDQFLQRMEEVGYVMPTEVQKQALPHLFSGRDCILHAQTGSGKTLAYLLLIYSIINTKKSSFQALVLVPTRELGMQVAKVARILAAKPSGVEGEQRSCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCQMLERQLFSLRTLQVLVVDEVDFIFNSSKQVNSLRKILTSYSSCNNRQTVFASASIPQHNRFLNEAMQQKWTKRDVIHIHVSPVEPMPSRIYHRFIVCDTKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKNAGNAPSTSLVIDFLKTSYHGSLDILLLEDDMNFNSRAASLLEVRKGGGYLLVATEVAARGVDFPEMTHIYNFDLPKTAIDYLHRAGRTCRKPFSDINCSVTSIIVSEERFVLKRYENELMFVCEELIP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05352 472 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 286 IPR014001 -
Trre16g05352 472 SMART ultradead3 92 306 IPR014001 -
Trre16g05352 472 CDD DEADc 85 270 - -
Trre16g05352 472 SMART helicmild6 352 436 IPR001650 -
Trre16g05352 472 Pfam Helicase conserved C-terminal domain 315 434 IPR001650 -
Trre16g05352 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 438 IPR027417 -
Trre16g05352 472 Gene3D - 25 287 IPR027417 -
Trre16g05352 472 Gene3D - 299 469 IPR027417 -
Trre16g05352 472 CDD SF2_C_DEAD 305 434 - -
Trre16g05352 472 Pfam DEAD/DEAH box helicase 97 270 IPR011545 GO:0003676|GO:0005524
Trre16g05352 472 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 472 IPR001650 -
Trre16g05352 472 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 69 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05352 Trre-Chr16 56465543 56470726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05352 81 470 Eukaryotic Initiation Factors Gene Family AT1G72730 26.817 3.34e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05352 - - psat:127138392 768.074