Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05345 ATGGTTTTGGAGGATCGTTTAGTGAGTGATGATGTTTCTGGTGACGATTTTCCTGTCGGTATGCGTGTTCTGGCTGTCGATGATGATCGGACTTGTCTCAAGTTGTTGGAGAATTTGCTTCGCAAATGCAAATATAATGTTACTACAACTACAGAAGCGGTGAAGGCACTAGAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTTGTTATTAGTGATGTAAATATGCCAGAAATGGATGGATTTAAGCTCCTTAAGCAAGTTGGACTTGAAATGGATGTACCATTTATCATGCTGTCGGGAAATGGCGATAAAGAGAGGGTGATGAAAGGTGTGATACATGGCGCTTGTGACTATCTAATGAAACCGATCCGAATGGAAGAGCTGCAGAATATATGGCAACATGTAGTGAGAAAGAAGATTGAAAGCAAGGATCAGAATAAAGGTACAGTTGCTGATGAGGAGAAAATCAGCAATGTGGCTGGGATATCTAGTCAAGACACAACATCTGAAAATATTCCTAACAAGAATCAAGTCCGGGGACCAAAAAGAAAAGAACTGAGCGAGGAAGAAGAAGAAGATGAAGAAGAAGAAGAATCGGAAGAAGATAATGATGAAGAGAATGATGAGCAACGCTCGACTCGGAAGAAGCCTCGTTTCATTTGGGATAACGACTTGCATAAAAAATTCGTTTCTGTAGTTAGTCAACTAGGCCTTGACAAGGCTTATCCTAAGAAAATACTTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTAGCTAGCCATCTGCAGAAATACAGACTTAGTCTCAAAAAGCCAACTAAACAGGCTAGAGTAGATGCTACATTGGATTCTCACCCACAAATGGGTTCAGTAGGTGGGTATGGAGATTTTTCCACCTTGTCTGGATCAAAAAGAATCTTAAGCAGCACATTACCATCATATGCATCTAGTGACATATTTAGTCGGCGGCTAAACACACCATCTAGGTTGAACTTGAGAGGAGTTAGTTCTTCTGCACCGGTCCTTGCGCTTCAATCTCCAAACTTTAACAGTTTCAAGCGGCCGACGTTTTCTGCAAAAGAAAGCTCAAGTTTTTTACAGGGCATCCGAACATCAATGTCGATGAACCAGTTTCAGCAGAACAGTTATCCAACGGGCAATATAAAGTTAAATCCAATTGATGATTCAAGTGCATTTTCAGCTTCCACTAGCTTTCAAAATATCAAAGCTACTGTTAATAATGCAAATAGTTATCTTTCTTGCATCCCAAGCAATCACCTTCTAGCACATAATTCAGGACCGTTCATAAATCAGTCTTCTGTTGGAGGTGCTGCAGTGAAAACAGAACCTTTTAACCCTGCCACAAGCAGTTCCTCTAATTCATTAGATTATAATCGGATCAGTGAAAGCTGGAAGAGTTCAGCTCAGTTTTCTAACTTTGCTACCAATTCTTCTCCATTGAATGGGGATTTTAACAATGATCAAATGTCTCACAATAGCTTAAAGTTTGCCTCTCTCAGTACTCATTTTAAGAAAACTCCAGTTGATTTTGCTTCGACGTGCGCCATTGCTGTTCCTTCGGAGGAAGCAATTCAATGTCAAGATGGATTACTTGAGAGTGTCGTAAAGGCTGCATGTTACACGCAGCAGCAAAATGCGGGTTCTGCCTTCAACAATACCTTGGATTCTCTAGCTTCTCCTAATGGAGACAATAGTTCCATGGGACATAGTTTAGCCCAAACTAGTAGTGTATCAACTACTCAGATGCCGGAAGTTGAGAAATTCTATTCAGATGCAAAAGTGGAATCAAATGGTGATTGCTTTTTTGAGCAAATGCTTTCTCTAGAAGGATTCATTCAGAATAGTTGTGTGTCCTTGGATGACACAATAAGTGAAAGGATCAAATAG 1917 0.4011 MVLEDRLVSDDVSGDDFPVGMRVLAVDDDRTCLKLLENLLRKCKYNVTTTTEAVKALEMLRENRNKFDLVISDVNMPEMDGFKLLKQVGLEMDVPFIMLSGNGDKERVMKGVIHGACDYLMKPIRMEELQNIWQHVVRKKIESKDQNKGTVADEEKISNVAGISSQDTTSENIPNKNQVRGPKRKELSEEEEEDEEEEESEEDNDEENDEQRSTRKKPRFIWDNDLHKKFVSVVSQLGLDKAYPKKILDLMNVEGLTRENVASHLQKYRLSLKKPTKQARVDATLDSHPQMGSVGGYGDFSTLSGSKRILSSTLPSYASSDIFSRRLNTPSRLNLRGVSSSAPVLALQSPNFNSFKRPTFSAKESSSFLQGIRTSMSMNQFQQNSYPTGNIKLNPIDDSSAFSASTSFQNIKATVNNANSYLSCIPSNHLLAHNSGPFINQSSVGGAAVKTEPFNPATSSSSNSLDYNRISESWKSSAQFSNFATNSSPLNGDFNNDQMSHNSLKFASLSTHFKKTPVDFASTCAIAVPSEEAIQCQDGLLESVVKAACYTQQQNAGSAFNNTLDSLASPNGDNSSMGHSLAQTSSVSTTQMPEVEKFYSDAKVESNGDCFFEQMLSLEGFIQNSCVSLDDTISERIK 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05345 638 Gene3D - 20 156 - -
Trre16g05345 638 Gene3D - 213 274 - -
Trre16g05345 638 Coils Coil 184 210 - -
Trre16g05345 638 MobiDBLite consensus disorder prediction 189 208 - -
Trre16g05345 638 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Trre16g05345 638 CDD REC_typeB_ARR-like 23 137 - -
Trre16g05345 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 390 IPR045279 GO:0009736
Trre16g05345 638 SMART REC_2 21 133 IPR001789 GO:0000160
Trre16g05345 638 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677
Trre16g05345 638 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 273 IPR017930 -
Trre16g05345 638 FunFam Two-component response regulator 213 275 - -
Trre16g05345 638 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
Trre16g05345 638 MobiDBLite consensus disorder prediction 143 215 - -
Trre16g05345 638 MobiDBLite consensus disorder prediction 159 177 - -
Trre16g05345 638 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Trre16g05345 638 Pfam Myb-like DNA-binding domain 222 269 IPR001005 -
Trre16g05345 638 PIRSF RR_ARR_type-B 5 632 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre16g05345 638 SUPERFAMILY CheY-like 20 143 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05345 Trre-Chr16 56427120 56429782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05345 15 418 Response Regulator Gene Family AT2G25180 45.215 4.44e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre16g05345 Response_reg 4.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05345 K14491 - tpra:123909856 1048.88