Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05338 ATGTCTATTAGAAAACCCCCATTCCCTCGGCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCTCAGCAAATTCTCTCTTATGTGAATGTCTCTCTTCATGATGGAGGAGCATTTGTGCTAACAGGTGCAAATGGCTCAGGAAAGTCAACTTTCATGCGCATGCTAGCTGGATTTTCTCGTCCTTCTGCAGGTGAAGTCCTTTGGAATGGCCATGACATTCAAACATCTGCAATCTTCCATCAGTATAAACTTCAGCTTAACTGGGTCTCTCTCAAGGATGCAATTAATGATAGGTTTAATGTTCTGGACAATATTCAATGGTTTGAACTTCTTGAAGGCAAGCACGGGAAGGCTATGCCTGCGCTTGAGATAATGGGACTAGGAAGATTGGCTAAGGAAAAGCCAAGGATGCTTTCAATGGGCCAGCGAAAAAGATTGCAACTTGCCAGAATGCTCGCAATTGATCGCCCCATATGGTTGCTAGATGAGCCTTCAGTTGCATTAGATGATGAAGGTGTAAAGTTACTCGAGTACATTATTGCAGAACACAGGAAACAAGGAGGAATTGTTATTGTAGCAACTCATTTACCCATCGAGATAGAAGATTCCATGGTCTTGAGGCTGCCACCAAGGTTTCCAAGGAGGATGACATTCACAGATATGCTTGATCGTAAAGATATTAGTTAA 690 0.4261 MSIRKPPFPRLLLNNVSCMRNAQQILSYVNVSLHDGGAFVLTGANGSGKSTFMRMLAGFSRPSAGEVLWNGHDIQTSAIFHQYKLQLNWVSLKDAINDRFNVLDNIQWFELLEGKHGKAMPALEIMGLGRLAKEKPRMLSMGQRKRLQLARMLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIVIVATHLPIEIEDSMVLRLPPRFPRRMTFTDMLDRKDIS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05338 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 6 223 IPR005895 GO:0017004|GO:0022857
Trre16g05338 229 NCBIfam heme ABC exporter ATP-binding protein CcmA 13 209 IPR005895 GO:0017004|GO:0022857
Trre16g05338 229 SMART AAA_5 35 223 IPR003593 GO:0016887
Trre16g05338 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 228 IPR003439 GO:0005524
Trre16g05338 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 202 IPR027417 -
Trre16g05338 229 Pfam ABC transporter 27 166 IPR003439 GO:0005524
Trre16g05338 229 Gene3D - 8 209 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05338 Trre-Chr16 56398672 56399361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05338 24 178 Calmodulin-binding Proteins AT2G36910 29.268 2.91e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05338 - - tpra:123910081 423.32