Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05336 ATGCAATCCCTCAACTCCCTCTTCAACTCTTCTTCTTCCGAAATTCCCATTCCTCTCCAACAAAATCACTCACAGATCCAAATCAACAACAACGACGCATTTCACAACGACGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCATGGACACTTGACCCTAACAACCCTAAACCCTTATGGGACCCTAATTCCGACGAAAATGTCACTTTCCCTAATTACGACGAACATCACAACAACCTTTCCTCCAAATTTCGTAACCACCAGATCACTGACAAGTCCGCCGCCGCTCTCATGCTTCTCATGCCTACTGCCGCCGATTCCGGACTTCTTCACATGCCTGCTGACTTTGACTCCTCTCAAAACGATGTCGTTAACGCTTCCTCCCTTTTACAGGCTGGTGACGCTTCCGTTCAAGCTCTCTTTAACGGTTTTTCCGGATCTCTCCACGGTGTCGCCGCCAATCAAACTCACCATTTTCAACCTCCTCAGGGGCAGAGTTTTGGAGGTGGTTCAGTGAGTGCAACGAACCAGGCTCCGGCGAGCGGTGCTCCGGCTCAGCCGAGGCAGAAAGTCAGGGCTAGAAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGTTGCGGAGAGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTAGTTGCTGATATGTCCTCCGAGGGTGTAAGTGACTGCGTCCAAGCCAACGGCAACGGTGGGACCCACCCAAGAAACCCCAAAACGGCGTCGTCTACAAACGAAAGCCTCACAATGACAGAGCATCAGGTGGCAAAGCTGATGGAAGAAGACATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTCTGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACTAGGAACCCTTTGAGCAATGCTGCTACCAATAACAATAACAATGTCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGATGGGCCATCCTCTCCCGGAATGTCCGTTAATAGCATTGTTAAAGATGCTAACTCTGCTTCTAAGTCGTAG 1212 0.4934 MQSLNSLFNSSSSEIPIPLQQNHSQIQINNNDAFHNDDFLKQMLSNLPPSSPWTLDPNNPKPLWDPNSDENVTFPNYDEHHNNLSSKFRNHQITDKSAAALMLLMPTAADSGLLHMPADFDSSQNDVVNASSLLQAGDASVQALFNGFSGSLHGVAANQTHHFQPPQGQSFGGGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGTHPRNPKTASSTNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLSNAATNNNNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05336 403 MobiDBLite consensus disorder prediction 360 403 - -
Trre16g05336 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Trre16g05336 403 FunFam Transcription factor bHLH66 198 263 - -
Trre16g05336 403 SMART finulus 207 256 IPR011598 GO:0046983
Trre16g05336 403 MobiDBLite consensus disorder prediction 160 207 - -
Trre16g05336 403 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 345 - -
Trre16g05336 403 MobiDBLite consensus disorder prediction 160 187 - -
Trre16g05336 403 Gene3D - 198 265 IPR036638 GO:0046983
Trre16g05336 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 261 IPR036638 GO:0046983
Trre16g05336 403 Pfam Helix-loop-helix DNA-binding domain 206 251 IPR011598 GO:0046983
Trre16g05336 403 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05336 Trre-Chr16 56376399 56379546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05336 187 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.232 7.67e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g05336 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05336 - - psat:127138414 615.535